Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq388 170 4e-37 seq284 149 1e-30 seq663 134 3e-26 seq342 129 1e-24 seq58 93.3 8e-14 seq312 84.2 4e-11 >seq388 Length=11445 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 9231 CCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 9290 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || |||| |||||||| || ||| Sbjct 9291 AGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGGA 9350 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 9351 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACC 9410 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 9411 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 9457 >seq284 Length=28030 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || || || ||||||||||| || |||||| Sbjct 19468 CCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAG 19409 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| || Sbjct 19408 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGG 19349 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || |||||||| || | || || || Sbjct 19348 ATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACC 19289 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 19288 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 19252 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || || ||||| ||||| Sbjct 19924 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 19865 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 19864 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 19805 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | |||||| ||||| || || | ||||| || Sbjct 19804 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACC 19745 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || ||||||||||||||||| |||||||| Sbjct 19744 TCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 19184 CCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19125 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || || || || || Sbjct 19124 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGG 19065 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 19064 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACC 19005 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| |||||||| Sbjct 19004 TCAAGAGTGATGGTCTTTCCCGT 18982 >seq663 Length=163754 Score = 134 bits (148), Expect = 3e-26 Identities = 445/677 (66%), Gaps = 39/677 (6%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| || ||||||||||||| || |||||| |||||| Sbjct 14481 CGCCACTGGATGTACTCGGAGGGAGTGCTGTCCAGGTGGTTATCGATATGGGCGAAAGCG 14540 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 14541 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 14600 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||||||||| ||||| || || | ||| || ||||| ||||||||||| Sbjct 14601 ATGAG-CTCACCGGTGAGGACGTTGATCAGAGTGGACTTTCCGGCACCGTTGGGGCCAAT 14659 Query 225160 CACGCCAATCCGGGA--TGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCT 225212 ||| |||| ||||| || ||| ||| || | || | |||| | | Sbjct 14660 GACGGCAATACGGGAGCCGAGCGAGCA--CTGGAAGGAGATGTCGGCAATCTGAGGCTTG 14717 Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCACGC------CACGCAGCTTCATGATGGCACGG 225265 ||| |||| |||| |||| || || ||||||| || || | Sbjct 14718 GAGGTACCAG---GGTACTGGAAGGACATGCGGGTGGCACGCAG------AATAGCCTTG 14768 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 14769 GCCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAG 14828 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 | || |||||||||||| ||| ||| | | || || || || |||||| Sbjct 14829 GCGCCGAGCTCGTAGTAAGATCGAGCAGATGGGACACGCTG-GACAAAGGCCTTCAGGTT 14887 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || || | ||||||||| | |||||| ||||| || ||| | ||| || Sbjct 14888 ACCCCTGTAACGCTTGAGCTTGAAG---CGCTCGTAGTGAACGATGTGCTG-GCAGACGT 14943 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 ||| |||||| |||||||||||| || ||||| || | || | | | | || | Sbjct 14944 TGTCGAGGAAGGTAGAGTCGTGGGAGACGATGATAGAGGTGCAAG---GGGA-GTTCTGG 14999 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| ||||| | || |||| ||||| ||||| ||||| ||| Sbjct 15000 AGGTACTCCTCGAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGA 15059 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| || || | | | || || ||| || |||| ||||||||| |||||||| Sbjct 15060 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAGCCA 15119 Query 225623 CCGGACAGGGAGCCGAT 225639 || || |||| || ||| Sbjct 15120 CCAGAAAGGGCGCTGAT 15136 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||| ||||| | ||| | || || ||||| | ||||| |||||| | ||| Sbjct 15318 GGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTTGACTTGCCAGAACCG 15377 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||| ||| || |||||| | | || ||||||| | ||| | || ||| ||| Sbjct 15378 TTGGGGCCGCAAAGACCGTAACGCTGGCCACGCTTGAGGCGGAGATGGGTCTGGTTGAGG 15437 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 || |||||| |||| ||||| |||||||| || | ||| ||||||||||||||||| Sbjct 15438 AGAATCTTGGCACCGTAGGCGAGGGAGAAAGTACAGTTGCAAAGGTCCTCACCCTCCTCA 15497 Query 225998 GTCTCCTTTGCCTTGTC 226014 |||| ||||||| Sbjct 15498 TCGTCCTCCTCCTTGTC 15514 >seq342 Length=17698 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 14464 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 14405 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || ||||| || ||||| || || ||||| | |||||| || Sbjct 14404 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 14345 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||| ||||| Sbjct 14344 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 14286 >seq58 Length=109527 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| | ||||||||||||||| || || || | ||| | | || | | |||| Sbjct 19617 GTCCAAGAAGCCAGAGTCGTGAGAGACGATCA--GACTGGTGATGTCGGGGTGCGTCTTG 19674 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| || ||||| || | |||| |||| || | ||||| |||||||||||||| Sbjct 19675 AGGTAGGTTTCCAGCCAGGCGATGTTGGTGACATCAAGATGGTTAGTAGGTTCGTCCAGG 19734 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || | |||||| ||| ||||| || | ||||| |||||||| ||||| || Sbjct 19735 AGGAGAACGTCAGCGCGCTGGAGCATGGCTCGGGCGAGAGCAAGCTTCATCTTCCAACCA 19794 Query 225623 CCGGACAGGGAGCC 225636 || ||||||||||| Sbjct 19795 CCCGACAGGGAGCC 19808 >seq312 Length=228657 Score = 84.2 bits (92), Expect = 4e-11 Identities = 217/328 (66%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 173117 CACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATG 173176 || ||||| || ||| |||| |||||| ||||| |||||| | || ||| Sbjct 225174 CATTTTGCCGCCCAGTCCCACGTGGACCTGAGCTTCGGCAACTCGTACGGCTTCACCCAC 225233 Query 173177 AACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAG 173236 | ||||||||| || || |||||||| |||||| | |||| | | | || || | Sbjct 225234 ACCAACGTCTATGGAACTCACGTTCTTCTGGAAAGTGCGAAGA---AGGTGGGAGTTAAA 225290 Query 173237 CGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAA 173296 || || || | | || || ||||| |||||||| |||| | | |||| | | || Sbjct 225291 CGATTTATGCACATTTCCACAGACGAGGTATACGGTGAGATCCATGCGGGCCATGACGAT 225350 Query 173297 GGCCTCGATGAACACTCGTCCCTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356 | ||||| | | | ||| | | || || |||||||| || || |||||| | | Sbjct 225351 GTGCTCGA--ATCCAGCATCCTT-GCCCCGACCAACCCATACGCTGCGAGCAAGGCGGCT 225407 Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416 ||||| ||| | | | | || || | | |||||| || ||||| || || Sbjct 225408 GCCGAGATGCTAGTTCAGTCTTACCAGAAGAGCTTCAAGCTCCCCGTCATTGTTGTACGG 225467 Query 173417 GGCAACAATGTGTATGGCCCGCATCAGT 173444 |||||||||| || ||||||||||||| Sbjct 225468 AGCAACAATGTCTACGGCCCGCATCAGT 225495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614600770440