Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq388 104 3e-17
seq284 98.7 1e-15
>seq388
Length=11445
Score = 104 bits (114), Expect = 3e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| || | ||||||||||| || || ||||| || ||| || || | || ||
Sbjct 9248 CACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 9307
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || ||||| || |||||||| ||||| | || | | ||||||||||
Sbjct 9308 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTG 9367
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
||| || |||| ||| | | | |||||| || ||||| || | ||||| || |
Sbjct 9368 GATCTTGGACTTGA-CGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 9426
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
| ||||| || ||||| || ||||| ||||| ||
Sbjct 9427 TCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 9460
>seq284
Length=28030
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || | || || |||||||| || |||||
Sbjct 19661 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 19602
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
||||||||||||||||| | || | | |||||| ||| ||| | || | ||||
Sbjct 19601 GATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATCC-TGAATCTTCGACTTGACAT 19543
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||||| || ||||| || | ||||| || || || || | ||||| |
Sbjct 19542 TGTCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGA 19483
Query 42196 CAAAGATTTGCAT 42208
|||||||||||||
Sbjct 19482 CAAAGATTTGCAT 19470
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||||||| ||| || || | || || |||||||||||||| ||
Sbjct 19889 CTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 19830
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| |||||||||||||| | || | || |||||||| | ||| | || | ||||
Sbjct 19829 AATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGT-CTTGAATCTTCGACTTGACAT 19771
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || || ||||| || |||| || || || ||||| || || ||||| |
Sbjct 19770 TGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGA 19711
Query 42196 CAAAGATTTGCAT 42208
| || || |||||
Sbjct 19710 CGAAAATCTGCAT 19698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543208203061680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |