Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq112 109 5e-19
seq388 95.1 1e-14
seq284 95.1 1e-14
>seq112
Length=604763
Score = 109 bits (120), Expect = 5e-19
Identities = 343/519 (66%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| | || || ||||| | ||||| || ||||||| || | | | | |
Sbjct 339446 GTTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCA 339505
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-GCAG 52444
| | ||| |||| |||| || ||||| || ||||| | |||| ||| | | |
Sbjct 339506 TCTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTG 339563
Query 52445 CTTTGCCG-CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503
|||| || ||||||| | | || | | || | ||||| ||| |||| ||| ||
Sbjct 339564 CTTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCA 339623
Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563
||||| | || || || || || || |||||||| ||||| || || ||| |||||
Sbjct 339624 ACGAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACT- 339680
Query 52564 CGCGCGTGA----CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619
| | | ||| |||| | | | | || | || |||| || ||| || ||
Sbjct 339681 CTCACTTGAAGAACCGAGCCA--GCAAGCAGAT-CATTCGTGAG-ATCATCACCGACGCT 339736
Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679
|| ||||| ||||||| | || | || ||||| || || ||||||||||||
Sbjct 339737 GTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAAC 339796
Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739
|| | |||| | |||||||||||||| || || ||||| | ||| || ||
Sbjct 339797 TCGGACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGG- 339855
Query 52740 CAGCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798
|| | | | | || ||| || ||| || || || || ||| | ||||| || ||||
Sbjct 339856 CAACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 339915
Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| ||||||||||| || || || ||
Sbjct 339916 CGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 339954
>seq388
Length=11445
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || || || || || || |||| |
Sbjct 9266 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 9325
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || |||||||||||||| || || || || ||||| ||| || || | |
Sbjct 9326 GATAAGTCGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 9385
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||||| ||||||||||| | || | ||| || || || || || || ||
Sbjct 9386 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 9445
Query 138603 AAAAATCTGCAT 138614
|| ||||||||
Sbjct 9446 GAAGATCTGCAT 9457
>seq284
Length=28030
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || |||||||||||| || ||||| ||||| || || || ||||
Sbjct 19665 TTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGG 19606
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536
|||| || ||||| ||||| || || ||||| || || || ||| | || | ||
Sbjct 19605 CGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATC-CTGAATCTTCGACTTG 19547
Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
|||| || | ||||||| ||||||||||| | || | || ||||| |||| ||
Sbjct 19546 ACATTG-TCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 19488
Query 138597 TTTTACAAAAATCTGCAT 138614
|| ||||| || |||||
Sbjct 19487 CTTGACAAAGATTTGCAT 19470
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | || | | | |||||||| ||||||||||| || |||
Sbjct 19924 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 19865
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | | | || || ||||| ||||| || ||
Sbjct 19864 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 19805
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || |||| || | || || | || || |
Sbjct 19804 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATAGTATCAGAAGATTCGA 19747
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | ||| || || || || || || || |||||||||||
Sbjct 19746 CCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258200379440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |