Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq112 109 5e-19 seq388 95.1 1e-14 seq284 95.1 1e-14 >seq112 Length=604763 Score = 109 bits (120), Expect = 5e-19 Identities = 343/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| | || || ||||| | ||||| || ||||||| || | | | | | Sbjct 339446 GTTCCTTGCATCCGAAAGAAGGCCGATTGGGCTATTCGGTGGATCCAGGACAAGAACTCA 339505 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-GCAG 52444 | | ||| |||| |||| || ||||| || ||||| | |||| ||| | | | Sbjct 339506 TCTTTTGCCCAGCGTCTGGTTGCTTTCGCTGCCGTTGAGGG--TATTTTCTTCAGTGGTG 339563 Query 52445 CTTTGCCG-CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 |||| || ||||||| | | || | | || | ||||| ||| |||| ||| || Sbjct 339564 CTTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCTTGACATTCTCCA 339623 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563 ||||| | || || || || || || |||||||| ||||| || || ||| ||||| Sbjct 339624 ACGAGCTCATTTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGTCTC--CTACACT- 339680 Query 52564 CGCGCGTGA----CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCG 52619 | | | ||| |||| | | | | || | || |||| || ||| || || Sbjct 339681 CTCACTTGAAGAACCGAGCCA--GCAAGCAGAT-CATTCGTGAG-ATCATCACCGACGCT 339736 Query 52620 GTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC 52679 || ||||| ||||||| | || | || ||||| || || |||||||||||| Sbjct 339737 GTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAAC 339796 Query 52680 GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGG 52739 || | |||| | |||||||||||||| || || ||||| | ||| || || Sbjct 339797 TCGGACCTCATGAAGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGG- 339855 Query 52740 CAGCCAAAGTACTT-CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | | | || ||| || ||| || || || || ||| | ||||| || |||| Sbjct 339856 CAACGAGAAGATTTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 339915 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| || || || || Sbjct 339916 CGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 339954 >seq388 Length=11445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || || || || || || |||| | Sbjct 9266 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAA 9325 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || |||||||||||||| || || || || ||||| ||| || || | | Sbjct 9326 GATAAGTCGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 9385 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||||||||| | || | ||| || || || || || || || Sbjct 9386 GTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 9445 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 9446 GAAGATCTGCAT 9457 >seq284 Length=28030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| || ||||| ||||| || || || |||| Sbjct 19665 TTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGG 19606 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 |||| || ||||| ||||| || || ||||| || || || ||| | || | || Sbjct 19605 CGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTCCTTATC-CTGAATCTTCGACTTG 19547 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||||| ||||||||||| | || | || ||||| |||| || Sbjct 19546 ACATTG-TCGATCGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTACCGGTCAAGGT 19488 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 19487 CTTGACAAAGATTTGCAT 19470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | | |||||||| ||||||||||| || ||| Sbjct 19924 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTC 19865 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | | | || || ||||| ||||| || || Sbjct 19864 AGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGG 19805 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || |||| || | || || | || || | Sbjct 19804 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACATTG-TCGATAGTATCAGAAGATTCGA 19747 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || || || || || || ||||||||||| Sbjct 19746 CCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258200379440