Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24 104 4e-17 >seq24 Length=306188 Score = 104 bits (114), Expect = 4e-17 Identities = 446/684 (65%), Gaps = 26/684 (4%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 || || |||||||| |||| | || |||||| | || | | || |||||||||||||| Sbjct 134858 TCAACAGTGAACTGGATGG-GAGCAGCGGCAGCCGTGGTGCGGAGGTAGTACATGCCGGT 134800 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || || || ||| || | ||||||| | | |||| || ||||||| Sbjct 134799 CTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTGGTGATCTTGCCCATTGTGGGGTC 134740 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 |||||| ||||| || ||||| || |||||| ||||| || ||||| |||| || Sbjct 134739 TTTCATGTGGATGTTGAGGGACTGAGACTGATCGATG-AAGGCACCACGATCGGCGGACA 134681 Query 204021 TATTGATAA--TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGT 204077 | | || | ||| | || ||||||||||||||||||||| | | || || | ||| Sbjct 134680 TTTGGAGGACCTGGCGT--TGGGAAATCTCCCACACCGTCTTGTAGAGCGACT-TAATGT 134624 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | || | | | | || || ||| || ||||| || | || | | || || Sbjct 134623 CGTCCGGAATGT-TAGGGATGTTCTGGATAGAACCGTTCTCAGAAATGATGCGGTTCTTC 134565 Query 204137 GTCTCCTCCCCCCACATGCCCA-ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | ||| ||||| ||||| | || | ||| ||| || || |||||| | | Sbjct 134564 ATGGCATCCGACCACAAGCCCATATCT-ACCAGGTCCTTCAAGAGCCAGGGGTTAACAAC 134506 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || | || || | || | | | ||| ||| | || ||||| Sbjct 134505 CTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGGTATAAGGCTCGAAGCA 134446 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||| ||||| | ||||| | || ||||| || ||||| || || || |||| | Sbjct 134445 TTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGAAGCAAGCT 134386 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT---CCAGTCGTGCA--TC 204370 |||||| | ||||| | | ||| ||| || ||| |||||| | || Sbjct 134385 GTTGCGAATACCGTGCTCCTTAACC---TGCTCGCGAAGGGTCTCCCAGTCCCAAAGGTC 134329 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | | ||| |||||| |||||| || ||||| | ||| || | | ||||| ||| Sbjct 134328 GGA--GGGCTTCACGTTCCACATATCAAACTGGAGGATACCCTCAGATGCTGGGGAACCC 134271 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 ||| | | | ||||| ||||| | || || ||||| |||||| | || || Sbjct 134270 TTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAG-TTGCACCGAGGCCGTCAAAGCAGC 134212 Query 204490 ATAGTACATGGTCTCAAAGATCTG 204513 | ||| ||||||||||||||||| Sbjct 134211 GTGGTAAATGGTCTCAAAGATCTG 134188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148470999120