Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq112 178 1e-39
seq388 131 2e-25
seq284 120 3e-22
seq342 105 7e-18
>seq112
Length=604763
Score = 178 bits (196), Expect = 1e-39
Identities = 333/482 (69%), Gaps = 12/482 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 339939 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 339880
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
|| | ||||| ||| | |||| | | | || || || | |||||| || |||
Sbjct 339879 GCAGACTTGTAAATCTTCTCGTTGCCAA---GTGCCACAAGAAGACGGTCGGCAACAAAC 339823
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|||||||||||| |||| || | || | ||||| ||| |||| ||||| || ||
Sbjct 339822 TCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA-AGGCAGTGCCTC 339764
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
||| || || ||||||||| ||| |||||||||| ||| || | || | | |
Sbjct 339763 GGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACGAATGATCTGCTT 339704
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| | || | | ||| || | | | || || |||||| |||| ||||||
Sbjct 339703 GCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTC 339644
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
|| | |||||||| |||||| ||| |||||||| |||||||| || || || |||||
Sbjct 339643 ATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAG 339584
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || |||| |||||| || ||||| | ||||| ||||| |||||||| ||
Sbjct 339583 CCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAAC 339524
Query 133041 CAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098
||| |||| | | || | || ||||| | ||| |||||| || | ||||| ||||||
Sbjct 339523 CAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG--GATCCACCGAATAGCCCAATCGGCC 339466
Query 133099 TT 133100
||
Sbjct 339465 TT 339464
Score = 109 bits (120), Expect = 5e-19
Identities = 190/276 (69%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||| || ||||| || || | || ||||| | ||| ||||| |||||||||
Sbjct 339343 GTAGGTATCAATGAGCAATGAGTAGGTCTCAGAGTGGATGTTTTCCATCATGATTTGAAA 339284
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|| || ||||| || ||||| | ||| || || ||| ||||| |||| ||
Sbjct 339283 ACCATAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCTGAATCGCTCAACCAAGTT 339224
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||| ||||||||||| || |||||| || ||||| || | ||| ||| || |
Sbjct 339223 TTCATTGACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGATGTGAGAGATAAAGAACTG 339164
Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| | ||| || | ||||||| | ||||||||||| || | |||||
Sbjct 339163 CTCGTCGGAAGTCAGACGATTGTTCCAGTCGTGTTGATCCTTGGACAGATCAATTTCCTC 339104
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| || ||||||||
Sbjct 339103 GGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 339068
>seq388
Length=11445
Score = 131 bits (144), Expect = 2e-25
Identities = 164/220 (75%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 9460 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 9401
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | |||| | || || |||| ||||| |||||||||||| | ||
Sbjct 9400 TCCGACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 9342
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||||||||| || || | ||| ||||| ||||| || || | || ||||| | ||||||
Sbjct 9341 CCAACAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTA 9282
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || ||||||| ||
Sbjct 9281 CAACATCCAGAAGGAGAGC-ACTCTTCACCTGGTGCTCCG 9243
>seq284
Length=28030
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| |||| |||||| | | || | | |
Sbjct 19252 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 19311
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| || ||| ||||||||||||| || |
Sbjct 19312 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 19371
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| ||||| || || | || |||||| ||||||||||||||||||||
Sbjct 19372 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 19431
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || | || || |||
Sbjct 19432 AATCTACCCTTCACCTCGTCCTCCGT 19457
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
||||| || |||||||| | || |||||| || | |||| | | | |||| ||||
Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAGTC 19040
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| ||||| || || | || || ||||| || || | ||| || ||
Sbjct 19041 GAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAA 19100
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434
||||| || |||| ||||||||| ||||||||||||||| |||||
Sbjct 19101 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 19148
>seq342
Length=17698
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | |
Sbjct 14286 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 14345
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| || || |||||||||||| | || || ||||| |
Sbjct 14346 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 14405
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | ||||| ||| ||||||||||||||| |||
Sbjct 14406 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 14465
Query 38433 G 38433
|
Sbjct 14466 G 14466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500168567287680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |