Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq112 178 1e-39 seq388 131 2e-25 seq284 120 3e-22 seq342 105 7e-18 >seq112 Length=604763 Score = 178 bits (196), Expect = 1e-39 Identities = 333/482 (69%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 339939 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 339880 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | ||||| ||| | |||| | | | || || || | |||||| || ||| Sbjct 339879 GCAGACTTGTAAATCTTCTCGTTGCCAA---GTGCCACAAGAAGACGGTCGGCAACAAAC 339823 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||||||| |||| || | || | ||||| ||| |||| ||||| || || Sbjct 339822 TCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA-AGGCAGTGCCTC 339764 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || ||||||||| ||| |||||||||| ||| || | || | | | Sbjct 339763 GGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACGAATGATCTGCTT 339704 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | || | | ||| || | | | || || |||||| |||| |||||| Sbjct 339703 GCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACAGGCGAAGTCGGTGTGCAGGCCCTC 339644 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | |||||||| |||||| ||| |||||||| |||||||| || || || ||||| Sbjct 339643 ATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATGAGACCACGCTTCTTGAG 339584 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| |||||| || ||||| | ||||| ||||| |||||||| || Sbjct 339583 CCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACCCTCAACGGCAGCGAAAGCAAC 339524 Query 133041 CAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 ||| |||| | | || | || ||||| | ||| |||||| || | ||||| |||||| Sbjct 339523 CAGACGCTGGGCAAAAGATGAGTTCTTGTCCTG--GATCCACCGAATAGCCCAATCGGCC 339466 Query 133099 TT 133100 || Sbjct 339465 TT 339464 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||| || ||||| || || | || ||||| | ||| ||||| ||||||||| Sbjct 339343 GTAGGTATCAATGAGCAATGAGTAGGTCTCAGAGTGGATGTTTTCCATCATGATTTGAAA 339284 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| | ||| || || ||| ||||| |||| || Sbjct 339283 ACCATAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCTGAATCGCTCAACCAAGTT 339224 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||||||||| || |||||| || ||||| || | ||| ||| || | Sbjct 339223 TTCATTGACGATGCCATCAGAGGCGGCAAAGAAGGCAAGGATGTGAGAGATAAAGAACTG 339164 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| | ||| || | ||||||| | ||||||||||| || | ||||| Sbjct 339163 CTCGTCGGAAGTCAGACGATTGTTCCAGTCGTGTTGATCCTTGGACAGATCAATTTCCTC 339104 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 339103 GGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 339068 >seq388 Length=11445 Score = 131 bits (144), Expect = 2e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 9460 AAGATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 9401 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | |||| | || || |||| ||||| |||||||||||| | || Sbjct 9400 TCCGACACTATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGA 9342 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | ||| ||||| ||||| || || | || ||||| | |||||| Sbjct 9341 CCAACAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTA 9282 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || ||||||| || Sbjct 9281 CAACATCCAGAAGGAGAGC-ACTCTTCACCTGGTGCTCCG 9243 >seq284 Length=28030 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| |||| |||||| | | || | | | Sbjct 19252 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 19311 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| || ||| ||||||||||||| || | Sbjct 19312 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 19371 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| ||||| || || | || |||||| |||||||||||||||||||| Sbjct 19372 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 19431 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || | || || ||| Sbjct 19432 AATCTACCCTTCACCTCGTCCTCCGT 19457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || |||||||| | || |||||| || | |||| | | | |||| |||| Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACG-TTAAGTC 19040 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || || | || || ||||| || || | ||| || || Sbjct 19041 GAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAA 19100 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || |||| ||||||||| ||||||||||||||| ||||| Sbjct 19101 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 19148 >seq342 Length=17698 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| | || |||||| || | |||| | | Sbjct 14286 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 14345 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || |||||||||||| | || || ||||| | Sbjct 14346 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 14405 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | ||||| ||| ||||||||||||||| ||| Sbjct 14406 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 14465 Query 38433 G 38433 | Sbjct 14466 G 14466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168567287680