Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10 298 7e-76 seq338 140 4e-28 seq254 102 1e-16 seq24 100 4e-16 seq108 93.3 5e-14 >seq10 Length=142094 Score = 298 bits (330), Expect = 7e-76 Identities = 994/1533 (65%), Gaps = 35/1533 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || |||| || ||||| | ||| || || || || || || Sbjct 86327 TCATCCTCCTCCTTGAACTTCTCGGCATCGGAAAGCATGCGCTCGATATCCTCCTTGGAC 86268 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || ||||||| | ||| || || | | |||| || | Sbjct 86267 AAGCGACCCTTGTCGTTGGTGATGATAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 86208 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||| | |||||| | || | || || || | Sbjct 86207 GCGGAGACGTTCATGATACCGTTGGCATCGAGATCGAAGGTAACCTCGATCTGAGGAACA 86148 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | ||||| || || | || || | || | | |||| ||| | Sbjct 86147 CCACGGGGGGCAGGGGGAATGCCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 86088 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTG 6866 | || || ||||| || || || | ||| | ||||| || || || || Sbjct 86087 GTGCGCTGGCGCTCACCCTCGTAAACCTGAATGAGGACACCG--GGCTGGTTGTCGGAGA 86030 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | ||||| | ||||| || || || | ||||| | | || Sbjct 86029 AGGTAGAGAAGACCTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 85970 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| || ||||| ||| |||| || || || ||||| | ||||| ||| | | Sbjct 85969 TCATCATGCCACCAGCAGTCTCGATACCGAGGGAGAGAGGGGCAACGTC---GAGAAGGA 85913 Query 6987 GG-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCG 7037 || ||| || || || | | ||||| | | |||||||| || || | Sbjct 85912 GGATCTCGCTGGTGGACTTGGAGCTGGTG---TCACCAGACAGAATGGCGGCCTGAACGG 85856 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 85855 CGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCGTTGA 85796 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || | | | | || | ||||| || || || |||||||| | |||| Sbjct 85795 AGTAGTCGGTAATGAGCTTCTGGACACGGGGGATACGGGTGGAGCCACCGACGAGGACGA 85736 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || |||||||| || | ||| || ||||| || | | Sbjct 85735 TCTCGTGGACGAGGCTCTTATCGATTTTCGCGTCGGCGAGGACACGGTCGACGGGCTGGA 85676 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || ||||| | ||| || || ||||| ||||| || ||||| ||||| || | Sbjct 85675 TAGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCTCGGGTGATGGAGGTGT 85616 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || || || || || | || || || | || || | Sbjct 85615 AGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCGATAGAGGTCTGCGCGGAGGAGGAAA 85556 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 |||||||| || ||||| || || || || | ||| ||||| || || || | Sbjct 85555 GAGTTCGCTTGGCACGCTCGCAGGCAGTGCGGAGACGTCGAAGCGCGCGAACATTGGAGC 85496 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | |||||| ||||| || | ||| || || | | ||||| || ||| | | Sbjct 85495 TCAAATCTTTTTTATGCTTTCTTTTGAATTCATTAACAAAGTGGTTAACGAGACGGTTGT 85436 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || ||||||| ||| || || || || || | ||||| || |||||||| Sbjct 85435 CGAAGTCCTCGCCACCCAGGTGAGTGTCACCAGCAGTTGACTTGACCTCGAAGATACCCT 85376 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || ||| | | | |||||||| || ||||||||||| || || || ||||| |||| Sbjct 85375 CCTCGATGGTGAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGT 85316 Query 7578 T-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| || | || | ||||| ||||||||||| || || || || || || || || Sbjct 85315 TGCGT-TCACCCTCAATCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCG 85257 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| ||||||||||| | ||||| || || || || || Sbjct 85256 TTGATGATTCGGAGGACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGGCGC 85197 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||| |||||||| ||||| || ||||| |||| | || ||| |||||| Sbjct 85196 TGGCTATCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTGTTAACGGTCTCACCGAGG 85137 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| || || || ||||| ||||| ||||| || | | Sbjct 85136 TAGGCCTCAGCGGTCTCACGCATCTTAGTGAGGACCATGGATGAGATCTCCTCGGGGGTG 85077 Query 7817 AACTGTTTCGTT-TCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC--- 7872 || || | ||| || || || || || || || || ||||| || || |||| Sbjct 85076 AA-GGTCTTGTTCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCTT 85024 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | ||| | | | | ||||| ||| | ||||||| || ||||| Sbjct 85023 GTCGATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGCTGAACTT 84964 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | |||||| || || || || ||||| | ||||||||||| ||||| Sbjct 84963 GCGGCCGATCAAACGCTTGGCGTCGAAGACGGTGTTCTGAGGGTTCATGGCGACCTGGTT 84904 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || ||||| ||||| || | || || || ||||| | || || || Sbjct 84903 CTTGGCGGCATCTCCGATCAGACGCTC---GGTGTCGGTGAAACCGACGAAGGAAGGAGT 84847 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 |||||||| || |||||||| ||||| || || Sbjct 84846 GGTTCGATTGCCCTGGTCGTTGGCAATGATATC 84814 >seq338 Length=18617 Score = 140 bits (154), Expect = 4e-28 Identities = 362/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || |||||||| ||||| || ||| || | || ||| | | || Sbjct 14767 AGGTCCTCGAATCGGGCACGGGTGATGGACATAGTGAAGTCCTCACCATCGAAGAGAGAG 14708 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || || || | || || || | || | || ||||| || ||||| || | Sbjct 14707 TCAATCTCGATAGTGGCCTGAGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGCAAG 14650 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || || || || || | ||||| | ||| ||||| || || Sbjct 14649 CAGTTCGGAGACGGCGCAGAGCGCGGGGATCGCCGGAGAGATCCTTCTTGCTCTTGCGGG 14590 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| |||| | | |||||||| | |||||||| || Sbjct 14589 TGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGACCACCCAGATGG 14531 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 14530 GTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTGAGGAGGGACACA 14471 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | || || ||||| || | ||| | |||| Sbjct 14470 TCGAAAGTACCACCACCGAGATCGTAGATCAGGACGTTGCGCTC--CTTCTCAG-ACTTA 14414 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| ||||| || || || || || || || || || || || | Sbjct 14413 CCGGCGCCAAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATGCGGAGGACG 14354 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || ||||| || ||||| |||||| Sbjct 14353 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAG 14294 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | ||| || | | ||| ||||| || || | | || || || || Sbjct 14293 GCGGGAACAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCC 14234 Query 7775 TTCAT 7779 ||||| Sbjct 14233 TTCAT 14229 >seq254 Length=34532 Score = 102 bits (112), Expect = 1e-16 Identities = 224/336 (67%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| || ||||| | ||| || || || ||| | ||||| || || | ||| Sbjct 16225 ATCGAAATCCTCGCCACCGAGGTGAGTGTCACCGTTGGTGGACTTGACCTCGAAAACACC 16284 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | || | || | |||||| ||||||||||| || || ||| || Sbjct 16285 GTTCTGGATCTCCAAGATGGAGATATCAAAGGTACCACCACCAAGATCGTAAACAGCGAC 16344 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | ||| | || ||| ||||||||||| || | ||| || || || || || Sbjct 16345 GACCCGGTCGGCCTC------CTTCTCGAGACCGTAGGCCAAAGCAGCGGCAGTAGGCTC 16398 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||| | ||| ||| ||| ||||||| ||| | ||||| || || ||||| Sbjct 16399 GTTAACGACACGGAGAACGTTGAGGCCAGAAATCTGACCGGCATCCTTGGTACTCTGTCG 16458 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || |||||||||||||| ||||| || ||||| |||| | ||| ||| ||| Sbjct 16459 CTGAGAGTCGTTAAAGTAGGCGGGGACAGTGACGACAGCGTTCTTGATGGGCTTTGAGAG 16518 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| | || || | || ||||| ||| | || || Sbjct 16519 ATAAGCCTCAGCCGTTTCCTTCATCTTGTTGAGGAC 16554 >seq24 Length=306188 Score = 100 bits (110), Expect = 4e-16 Identities = 291/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || || || |||||||||| ||| || ||||||| ||| | || | ||| ||| | Sbjct 133625 TCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGG 133566 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 || ||||| | || || ||| || | || | || || | || ||||||||||| Sbjct 133565 GCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAG 133506 Query 105679 GGTTCTAAATAGACTGCAATAG-ACC------CTTTACGACGCCCCGCTTGATTGACATA 105731 || || | || | || | || ||| ||| | ||||| || | ||| || Sbjct 133505 GGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC----TGGTCGACGTA 133450 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 || || || ||| | || || | ||| ||||| | ||||| ||| || || || || Sbjct 133449 TCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCGTTGGT 133390 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || ||| | || | ||||| | ||| |||| | || || || || || Sbjct 133389 ACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGACCGATGCCTCCTGC 133330 Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911 | ||| ||| ||||| || | || ||||| ||||||||||| || ||||| Sbjct 133329 CATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGCTGTCTTC 133270 Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACA 105970 ||| | ||| |||||| || || |||| || || ||| || ||||| |||||||||| Sbjct 133269 CTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGG-CTGAGGGGTACCCGCATTGAACA 133211 Query 105971 GAGTTGGTGTTGCATGAATGAACA 105994 | ||||||| || ||| |||||| Sbjct 133210 GGGTTGGTGAAGCGTGAGTGAACA 133187 >seq108 Length=86109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||||| || ||| || |||| ||| Sbjct 27125 ATCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGACACC 27066 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 27065 CTGGTCAATGGAGAGAAGAGACACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 27009 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| ||| | | | |||| || ||||| || |||||||| || || || || | Sbjct 27008 AATC-TGTCGCTCGCCGTCGGTCTTGTCCAGACCATAAGCGATAGCGGCGGCGGTGGGCT 26950 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || || ||| ||||| ||||| | | ||||| || || || |||| Sbjct 26949 CGTTGACAACTCGGAGGACGTTGAGGCCGGCAATGATACCGGCATCCTTGGTAGCCTGTC 26890 Query 7695 GTTG 7698 | || Sbjct 26889 GCTG 26886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127425188680