Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq24 183 4e-41 seq221 131 2e-25 seq112 109 6e-19 >seq24 Length=306188 Score = 183 bits (202), Expect = 4e-41 Identities = 1006/1589 (63%), Gaps = 45/1589 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 |||||||||||||||||||| ||||||||| || | ||| | || || |||| Sbjct 134720 GACTGAGACTGATCGATGAAGGCACCACGATCGGCGGACATTTGGAGGACCTGGCGTTGG 134661 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||| ||||| || |||||||| | ||| || || || ||||||| |||||| Sbjct 134660 GAAATCTCCCACACCGTCTTGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTC 134601 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACC 109686 || ||||| || | | ||| | | |||||| | | |||||| | || | Sbjct 134600 TGGATAGAACCGTTCTCAGAAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATA 134541 Query 109687 TTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGC 109744 | | || || | ||||| | | || || || || ||||||||||| | Sbjct 134540 TCTACCAGGTCCTT--CAAGAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACAC 134483 Query 109745 GTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTG 109804 | || |||||||||| | || || || ||||| || || || ||||| ||||| || | Sbjct 134482 GGCGCTGGTAGATGTTCGAGGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCG 134423 Query 109805 CAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTA 109864 ||| || || ||||| || || | || | ||||| || | ||| | | ||| | Sbjct 134422 AAGTACTGGCAGTAGGCATAGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAA 134363 Query 109865 CCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACA 109924 || |||| || | | ||||| || || | | || ||| ||| ||| Sbjct 134362 CCTGCTCGCGAAGGGTCTCCCAGTCCCAAAGGTCGGAGGGCTT-----CACGTTCC-ACA 134309 Query 109925 TATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCT 109984 |||| || || | |||||||| || || ||||||||||| || ||| | |||| Sbjct 134308 TATCAAACTGGAGGATACCCTCAGATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCT 134249 Query 109985 CAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATAT 110044 | ||| || | | || ||| | || || || || || |||||||| || | Sbjct 134248 CCTCCTTAGCGAGTTGCACCGAGGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCT 134189 Query 110045 GAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACAT 110104 | |||| |||| ||| | |||||||| | | | | | || ||| Sbjct 134188 GCTTGTTCAACTCACGAGCCTCGGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCAT 134129 Query 110105 CCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAG 110164 | || |||||||| ||||||| ||||||||| || || |||||| | || || Sbjct 134128 CAGCAAGACCCTGGACACCGACACCAATGGGTCGGTGACGCATGTTGCTGTTGCGGGCCT 134069 Query 110165 TTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCG 110224 | |||||| |||| |||||| | | || | || ||| || | Sbjct 134068 CGATGATGGGGTAGTGGTTGACGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTG 134009 Query 110225 TGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG---ACATATTTGG 110281 ||| || || || || | | | ||| | | | ||| || | | ||| | | Sbjct 134008 TGACCTCGTGTAGCTTCTGGAAGTCGTA-GCAGCC--CTCGTTGTAGTCAACAAAGGAAG 133952 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 | ||||| | || || |||||||| |||| ||| || | ||| || | | Sbjct 133951 GCAGAGCCAATGATGCGAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGA 133892 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 | || || || | ||||||||| |||| |||| ||||||||| || ||| || Sbjct 133891 TCTCAGTGCAAAGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGT 133832 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 |||| ||||| ||||||||| | ||| | || ||||| ||||| | || | |||| Sbjct 133831 TGCAGCTGTCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGG 133772 Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGT--TGCG---TTAGCGAGACCTTCCTCCTCGT 110515 | | ||| | | || | ||| | || |||| || || || ||| ||| | Sbjct 133771 CATACCACAGCTTCTG-GGCCTTCATGGTCTTGCGACCTTTGCCAG-----CCTGCTCAT 133718 Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTG 110574 |||| ||||| | ||| || || | ||||| ||||| ||| ||| || || Sbjct 133717 ACTTCTCGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAG-CCCGGGGCACTCA 133659 Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 | ||| || | ||| | ||| | || || ||| || | |||||||||||| || || Sbjct 133658 TTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGG 133599 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||||| ||| |||| | |||||| || || ||||| | || ||||| ||| Sbjct 133598 ATCCACAGGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGC 133539 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA------GACAGCGATG 110748 || ||||| || || | | || | |||||| || || || || || ||| | Sbjct 133538 AGATCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCG 133479 Query 110749 GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 | || ||| | | || |||||| || || || || ||| |||||||| | |||| Sbjct 133478 GGTCGCTT--GTTG-CCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGC 133422 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868 |||||||| | |||| ||| || || ||||| ||| || ||||||| Sbjct 133421 ATAGGAATGACACCATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGG 133362 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGT 110927 || ||| | | | ||| || || || ||| ||| || |||| | ||| | Sbjct 133361 ATTCGGTGCACGTTGAGACCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCT-T 133303 Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987 ||| || | || ||||| || || ||| |||| || ||| || ||||| ||||| Sbjct 133302 GAGGGTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGA 133243 Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACC 111047 || |||||| |||| || ||||||||||| || || |||| || ||| ||||||| | Sbjct 133242 CAGCTGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAG--C 133185 Query 111048 TTG--GGACATCTTGTTGTATGTGTCGAG 111074 ||| |||||| |||||| || || || Sbjct 133184 TTGCTGGACATGAGGTTGTAGGTCTCCAG 133156 >seq221 Length=44117 Score = 131 bits (144), Expect = 2e-25 Identities = 304/447 (68%), Gaps = 20/447 (4%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAG-TCTCAT-TGTCGA 11593 || || || ||| | ||||| || |||| | || |||| || | |||| | ||| | Sbjct 2945 TCGAGCATGTCGGCTCGGTTGGTGCCGGCCAAAACGACAA--CCTGCTCTCGTGTGTTAA 3002 Query 11594 AACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTG-----GA 11648 | ||||||||||| || || | |||||| | || || ||||| |||||| || Sbjct 3003 ATCCGTCCATTTCGGTCAGGATCTGGTTAAGTGTTGCCTCCCGCTCGTCGTTGCCACCGA 3062 Query 11649 GGGCAT-ACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGA 11707 | | | ||| | || |||| |||| ||||| || || |||||||| | || Sbjct 3063 AGCCTTTACCGCTCTCCTGACGCGCTCGGCCGATGGCGTCGATTTCGTCGATGAAGATGA 3122 Query 11708 TACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACAC 11767 | || ||| ||| || ||| |||| | || || || || | ||||||| Sbjct 3123 TGCAGGGTGCGTTCTTTCGGCCCTCGGCGAACAAGTCTCGCACTCGAGAAGGGCCAACAC 3182 Query 11768 CTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 | ||||||||||||||||| | | | || | ||||||| |||||||||| |||||| Sbjct 3183 CCACGAACATCTCAACGAACTCGGAACCGCTCA-CACTGAA-GAAGGGAACACCAGACTC 3240 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || || |||| || || || || ||||| ||||| || | ||||||||||| || Sbjct 3241 GCCGGCCGTGGCCTTGGCAAGTAGTGTTTTACCAGTACCCGGAGGACCAGCGAGAATCGC 3300 Query 11886 GCCACGGGGGATCTTGGCACC--ACTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTC 11942 ||| ||||| |||||||| || |||| | || | |||||||| ||||||||| Sbjct 3301 GCCTCGGGGAATCTTGGCTCCTAGCTTCTCGAACT---TCTCAGGCTGTTTGAGGAAGCT 3357 Query 11943 CACAATCTCCTCAAGTTCCTCCTTGGC 11969 |||| |||| | |||| |||||| Sbjct 3358 GACAAACTCCATGATTTCCATCTTGGC 3384 >seq112 Length=604763 Score = 109 bits (120), Expect = 6e-19 Identities = 334/501 (67%), Gaps = 23/501 (5%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| || | ||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 339954 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 339895 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | || | | |||| |||| | |||||||| Sbjct 339894 AAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTG-CCAAGTGCCACAAGAAGACG 339836 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 |||| ||| ||||||| |||| ||| ||||| ||||| || | ||| || Sbjct 339835 GTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA 339776 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 || || || ||| | ||| | || |||||| | ||||| || | | ||| | Sbjct 339775 AGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACG 339716 Query 119447 AATAGTTTCTG-TCGATGGTTTGTTTCT-CAAG----AGTTTAAACAACTCTACGGCAAA 119500 ||| | ||| | | ||| | | |||| |||| ||| || || ||| || Sbjct 339715 AATGAT--CTGCTTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGACA----GGCGAA 339662 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCA 119559 || || || || ||||| ||||| |||||||| || ||| | ||| ||||||| Sbjct 339661 GTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAG-CCAGGCA 339603 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGG-CACAAAAACTTCCAGAAAAGAAGATGCCC 119618 |||| || | ||||| ||||| ||||||| | | ||| | ||| ||||| || ||| Sbjct 339602 TGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGC-ACCACTGAAGAAAATACCC 339544 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCA 119674 || || |||||||| | ||||||| ||||||| | ||| |||||| || ||| Sbjct 339543 TCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGAT-GAGTTCTTGTCCTGGATCCA 339485 Query 119675 CTTGAGAGCCCAGTTGGCCTT 119695 | | |||||| | |||||| Sbjct 339484 CCGAATAGCCCAATCGGCCTT 339464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971015790600