Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq388 156 9e-33 seq284 149 1e-30 seq342 107 4e-18 >seq388 Length=11445 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||||||| ||| || || || ||||| ||| || |||| |||||||| Sbjct 9249 ACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCA 9308 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||||||||| |||||||| || ||||| || || ||||| || Sbjct 9309 AGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 9368 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||| ||||| |||||||| | |||||| Sbjct 9369 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 9428 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 9429 CCCGTGAGGGTCTTGACGAAGATCTGCAT 9457 >seq284 Length=28030 Score = 149 bits (164), Expect = 1e-30 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 |||| | ||||||||||||||| ||||| || || || ||||| |||| |||| || | Sbjct 19687 AGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTACG 19629 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || |||||||| || |||||||| ||||| || |||||||| || || || || Sbjct 19628 GCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCTC 19569 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || |||||| || || || ||||| || ||||| |||||||| Sbjct 19568 CTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGGT 19509 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || || || | |||||| Sbjct 19508 GATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 19470 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| || ||||| || ||||| |||||||| || || | ||||| || Sbjct 19907 AACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCGACCATCCTC 19848 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || || |||||||| || |||||||| || ||||| || |||||||| Sbjct 19847 CAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 19788 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || || || || || ||| ||| || || || |||| |||||| Sbjct 19787 AATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGTAATCGTCTT 19728 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 19727 GCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | || || ||| Sbjct 19166 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 19107 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || || || ||||| ||||| || ||||| || Sbjct 19106 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGG 19047 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || ||||||||||| || || ||||| || | |||||| Sbjct 19046 ATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTT 18987 Query 195112 CCTGTCA 195118 || |||| Sbjct 18986 CCCGTCA 18980 >seq342 Length=17698 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||| | ||||| || |||||||| || |||||||| Sbjct 14464 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 14405 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || || || || ||||| || || || || || || || |||||| || ||| Sbjct 14404 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 14345 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || |||||||| | ||||| || || | || || ||||| Sbjct 14344 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 14286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471976287259