Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24 334 1e-86 seq112 129 1e-24 >seq24 Length=306188 Score = 334 bits (370), Expect = 1e-86 Identities = 1230/1884 (65%), Gaps = 92/1884 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||| |||||| ||||||| || ||||||||||||||||| Sbjct 134855 ACAGTGAACTGGATGGGAGCAGCGGCAGCCGTGGTGCGGAGGTAGTACATGCCGGTCTTG 134796 Query 212613 AGGCC---CTTGCCCCAGCCGTGC-ATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATAT 212667 || || ||| |||||| ||| | |||||| |||| ||| |||| | || Sbjct 134795 AGACCGAGCTT---CCAGCC-TGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATTG 134747 Query 212668 TCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGG 212727 | |||| | | |||| | ||| ||||||||| ||| || ||||| | Sbjct 134746 TGGGGTCTTTCATGTGG---------ATGTTGAGGGACTGAGACTGATCGATGAAGGCAC 134696 Query 212728 CCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGA 212787 | | || |||| ||| | | || | | ||||| | ||||||||| |||||| ||| Sbjct 134695 CACGATCGGCGGACATTTGGAGGACCTGGCGTTGGGAAATCTCCCACACCGTCTTGTAGA 134636 Query 212788 TTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGG 212844 || | ||| || || | | ||||||||||| | ||| || | | ||| Sbjct 134635 GCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTCAGAAATGA 134576 Query 212845 TCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCT-CCAGGCACTTGACCAGG 212903 | | | | |||| | || ||| | |||| | ||| ||||| ||| | || Sbjct 134575 TGCGGTTCTT---CATGGCATCCGACCACAAGCCCATA-TCTACCAGGTCCTTCAAGAGC 134520 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||||| || | |||||| ||||| | || || | | |||||| | ||| || || Sbjct 134519 CAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGGTA 134460 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| || ||||| || ||||| ||||| | ||| ||||| || ||||| || Sbjct 134459 TAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGG 134400 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC-CGAAGC-TCTGCCC 213081 || | || | ||||| | | |||||||| | | || | ||||| ||| ||| Sbjct 134399 GCGAGAAGCAAGCTGTTGCGAATACCGTGCTC-CTTAACCTGCTCGCGAAGGGTCT-CCC 134342 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGC 213141 ||||||| ||||| | ||||||||||||||| |||||||| | ||| | Sbjct 134341 AGTCCCAA---------AGGTCGGAGGGCTTCACGTTCCACATATCAAACTGGAGGATAC 134291 Query 213142 CTT----TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGC 213197 | | |||| ||| |||| | | ||||| || || | |||||| || || Sbjct 134290 CCTCAGATGCT----GGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGT 134235 Query 213198 TCGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 | ||| || ||| || ||||||| ||| ||||| ||||| |||| | |||| | || Sbjct 134234 T-GCACCGAGGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTC 134176 Query 213257 CTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTG 213316 ||||| |||||| ||||||||| | |||| ||||||| || ||||| Sbjct 134175 ACGAGCCTCGGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTG 134116 Query 213317 GACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTA 213376 ||| |||| || ||||||| ||| | || ||| ||| | ||| | |||||| Sbjct 134115 GACACCGACACCAATGGGTCGGTGACGCATGTTGCTGTTGCGGGCCTCGATGATGGGGTA 134056 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 |||| |||||| |||||||| | ||||||| | | || | ||||| | | || Sbjct 134055 GTGGTTGACGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAG 133996 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGCAGGGCGA-TGC 213492 | || | | | | | ||||| ||| | ||||| |||||| || | || Sbjct 133995 CTTCTGGAAGTCGTA---GCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGA 133939 Query 213493 TGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 || | || |||||||| || ||||| | | ||| | |||||| |||||||| ||||| Sbjct 133938 TG-CGAGATTGCAAACAGCGACCTCATCGGGAG-CACAGTACTCGATGATCTCAGTGCAA 133881 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TC 213610 |||||| | || |||||||||||||||| ||||| | ||| || | |||| || Sbjct 133880 AGGTTGGAACTGCGAATGGTGCCCAGGTTCTTCTGGTT-GCTTTTACGGTTGCAGCTGTC 133822 Query 213611 CTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAG 213668 ||||||||||||| | ||| ||||| || ||| | | ||| || ||| ||| Sbjct 133821 CTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGAT--GGCATACCAC 133764 Query 213669 AGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAG 213728 || | | |||||| | | | ||| | | || | ||| |||| ||||| Sbjct 133763 AGCTTCTGGGCCTTCATGGTCTTGC-GACCTTTGCCAGCCTG--CTCATACTTCTCGTAC 133707 Query 213729 AGCTCGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACAT 213787 |||| | ||| || | || || | | | | || || || || ||| ||||| Sbjct 133706 AGCTTCTCGAACTCATCACCGTAGCAATCAG-CAAGCCCGGGGCACTCATTGGGGCACAT 133648 Query 213788 GAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 ||| ||||||| |||| | |||| ||| | || ||||||||| || |||| |||||| | Sbjct 133647 GAGAGTCCAGTCGCCGTTCTTCTC-GACACGCTTCATGAACAGATCGGGGATCCACAGGG 133589 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||||| ||| | | | || ||| || ||| ||||||||||| | | Sbjct 133588 CCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGA 133529 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCT 213963 | ||||| | ||| |||||||| ||||| | ||| ||||| || || || | || | | Sbjct 133528 ATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGT 133469 Query 213964 TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 ||||||||||||| || | || ||||||||| || || | || | | | Sbjct 133468 TGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACAC 133409 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCAT 214081 | ||||| |||||||| || || || || ||||||| ||| | | | ||| | | Sbjct 133408 CATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGT 133349 Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141 |||| || ||||| || || ||||||||||||||| || | | | || || Sbjct 133348 TGAGA--CCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTA 133291 Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201 ||| ||| | |||||||| || | | || | || ||||||| || ||||| ||| Sbjct 133290 GATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTG 133231 Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | || | ||||| || || || || || | | | |||| | || | ||| Sbjct 133230 AGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAG 133171 Query 214262 CCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCAT 214321 |||||||||||||||| |||||||| ||| | |||| | ||| Sbjct 133170 GTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCAT 133111 Query 214322 CAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTG---GGGCCCTTGAGCAGGTAGGAGCG 214378 | ||||||||| || | ||| | || ||| | ||| || |||||||| || Sbjct 133110 GATCATGTGCTGAGGTCGCTC-AACAATC--TTGCCATCGATCTTCAGGAGGTAGGATCG 133054 Query 214379 CTCCAGAGTCTTGAACCCAAAGTA 214402 ||| ||||||||||| || ||||| Sbjct 133053 CTCTAGAGTCTTGAAGCCGAAGTA 133030 >seq112 Length=604763 Score = 129 bits (142), Expect = 1e-24 Identities = 344/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 339958 CTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 339899 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCA 47957 ||||||| ||||||||||| | || || | | | || ||| || || | | Sbjct 339898 CATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCT-TCTCGTTGCCAAGTGCCACAAGAA 339840 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || || |||||||||||| ||||||| ||||||||| | || | Sbjct 339839 GACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAG 339780 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| |||| || || ||||||| ||| || | || || || | |||| Sbjct 339779 CGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCT 339720 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT---GGCATAGAGCATG---C 48131 ||| || |||| ||| || ||| ||| | | || | | | | Sbjct 339719 C----ACGAATGA-TCTGC----TTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGAC 339669 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||| ||||| |||||| ||| || || || |||||| |||||||||| | | Sbjct 339668 AGGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGC 339609 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || | || ||||||||||| || | |||||||| ||| |||||| | Sbjct 339608 CAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAA 339549 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || || | || | ||||| | ||||||||| || Sbjct 339548 TACCCTCAACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGATGAGTTCTTGTCCTGGA 339489 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| || ||||| || |||||||| |||||| || Sbjct 339488 TCCACCGAATAGCCCAATCGGCCTTCTTTCGGATGCAAGG 339449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524916903680