Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 201 2e-46 seq112 127 4e-24 >seq24 Length=306188 Score = 201 bits (222), Expect = 2e-46 Identities = 835/1287 (65%), Gaps = 63/1287 (5%) Strand=Plus/Minus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 ||||| ||||||||||| ||||||||||||||| |||||| | ||| | ||||||| Sbjct 134223 CGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAA-CTCACGAGCCTCGG 134165 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | || ||||||||| || || | | ||| | || || || ||||| || |||| || Sbjct 134164 GGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGACAC 134105 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 | ||||| | ||| | | ||||| | |||| || || | ||| || |||||| Sbjct 134104 CAATGGGTCGGTGACGCATGTTGCTGTTGCGG--GCCTCGATGATGGGGTAGTGGTTGAC 134047 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| | ||| | || || | |||||| ||||||||| Sbjct 134046 GTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGAA 133987 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC-AACGC 221711 | | | || ||| |||| | | || ||||| | || || || | Sbjct 133986 GTCGTA---------GCAGCCCTCGTTGTAG---TCAACAAAGGAAGGCAGAGCCAATGA 133939 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTAC 221768 || | || || || || || ||||| || | | | |||| |||||||| || | Sbjct 133938 TG-CGAGATTGCAAACAGCGACCTCATC---GGGAGCACAGTACTCGATGATCTCAGTGC 133883 Query 221769 AGAGGTTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 | |||||| | ||| ||||| ||||||| || || || || || ||| |||| Sbjct 133882 AAAGGTTG--GAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTG-CAGC 133826 Query 221827 -GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCC 221885 ||||||||||||||| || || ||| || || ||||||| ||| || | || Sbjct 133825 TGTCCTTGTAGAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACC 133766 Query 221886 AGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCGG 221942 | || | ||||| || | | ||||| ||| | | | || |||||| Sbjct 133765 ACAGCT-TCTGGGCCTT--CATGGTCTTGCG---ACCTTTGCCAGCCTGCTCATACTTCT 133712 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || ||| | || |||| |||||||| || | || || || ||| ||| | Sbjct 133711 CGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGC 133652 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||| ||| |||||| ||| | | ||| | || |||||| || || |||||||||| Sbjct 133651 ACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACA 133592 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | ||| || | || | | || || ||| ||||| ||| || | |||||||| Sbjct 133591 GGGCCAAGAACAAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCA 133532 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 | || ||||||| ||| |||||||| ||||| || || | ||| | ||| |||||||||| Sbjct 133531 AGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCT 133472 Query 222183 TGTTGCCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240 ||||||| ||||| || || ||| ||| | |||||||| || || | || | Sbjct 133471 TGTTGCCGCCCTGGTCGACGTATC--GAGCAGTGTTGTTGAAGACACGGAGCATAGGAAT 133414 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACT 222300 | || ||||| |||||||| || |||||| | ||| ||| | || | | Sbjct 133413 GACACCATTGGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCAC---GGATTCG 133357 Query 222301 G-GCA----GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | ||| || | ||||| || || || || ||||||||||| || ||||||| Sbjct 133356 GTGCACGTTGAGA--CCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGG 133299 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 ||||| ||| || || || ||| ||||| | || | ||| || || || |||| | Sbjct 133298 GTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGC 133239 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCT 222474 |||| | | || || || || ||||| || || ||||| || || ||| || Sbjct 133238 TGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAA-CAGCTTGCT 133180 Query 222475 AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGG 222533 ||||| || | ||| ||||| | ||| | |||||| ||| ||| || | | | | Sbjct 133179 GGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCCAGATGCCG-ACAG 133121 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAG 222591 || | |||| ||||| ||| || | ||| ||| || | || || || || Sbjct 133120 CGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCT--TCAGGAG 133063 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| ||| || ||||||||||| || ||||| | | || || || | | | | || Sbjct 133062 GTAGGATCGCTCTAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAATCACGGTCATAGAC 133003 Query 222652 CACGGCGGCGTCCAGCTCCGACTTGTG 222678 | ||| | ||||| |||| ||||| Sbjct 133002 GATGGCAGAGTCCAACTCCTCTTTGTG 132976 >seq112 Length=604763 Score = 127 bits (140), Expect = 4e-24 Identities = 328/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| || ||||||| | | ||| | | | |||| | |||| ||||| || || Sbjct 339473 TGGGCTATTCGGTGGATCCAGGACAAGAACTCATCTTTTGCCCAGCGTCTGGTTGCTTTC 339532 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||||| || ||||| || || ||||| ||| | || ||| ||||||||||||||||| || Sbjct 339533 GCTGCCGTTGAGGGTATTTTCTTCAGTGGTGCTTTCGCGTCCATCTTCTGGCTCAAGAAG 339592 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || || || |||||||||||||| | || ||||| || Sbjct 339593 CGTGGTCTCATGCCTGGCTTGACATTCTCCAACGAGCTCATTTCTCGTGATGAGGGCCTG 339652 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072 |||| || || ||||| || |||||| |||||| || | | |||| | Sbjct 339653 CACACCGACTTCGCCTGTCT--CCTACAC-TCTCACTTGAAGAACCGAGC-CAGCAAGCA 339708 Query 26073 GA-CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 || | || || ||||||| || ||||| | |||||| ||||||| | Sbjct 339709 GATCATTCGTGAG-ATCATCACCGACGCTGTCAACATCGAGCAGGAGTTCCTGACCGAGG 339767 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAGTAT 26190 ||||||||||| | || ||||||| |||||||| |||| | Sbjct 339768 CACTGCCTTGCGCTCTTCTGGGCATGAAC-TCGGACCTCATGAAGCAATACATCGAGTTT 339826 Query 26191 GTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAACC 26248 || ||||||| ||| | |||| || || || || | | ||| ||| ||| |||| Sbjct 339827 GTTGCCGACCGTCTTCTTGTGGCA-CTTGGCAACGAGAAGATTTACAAGTCTGCC-AACC 339884 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || | | || |||||||||||||| || ||| | | Sbjct 339885 CCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTG 339944 Query 26309 TCGGCGACTATCA 26321 | || || || || Sbjct 339945 TTGGTGATTACCA 339957 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/258 (67%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||| ||||| || ||||||||| Sbjct 339059 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATCTG 339118 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTC---TATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| ||| |||| || || | | ||||||||| ||| || Sbjct 339119 TCCAAGGATCAACACGACTGGAACAATCGTCTGACTTCCGACGAGCAGTTCTTTATCTCT 339178 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || |||||||| ||||||||||| || || || || || || ||| || Sbjct 339179 CACATCCTTGCCTTCTTTGCCGCCTCTGATGGCATCGTCAATGAAAACTTGGTTGAGCGA 339238 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| | ||||| || ||||| ||||| || || || Sbjct 339239 TTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAATCATGATG 339298 Query 25714 GAAAATGTGCACTCTGAG 25731 ||||| | ||||||||| Sbjct 339299 GAAAACATCCACTCTGAG 339316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836939650880