Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq24 150 2e-30 seq99 140 4e-27 seq112 136 5e-26 seq667 93.3 5e-13 seq57 87.8 2e-11 seq276 86.0 8e-11 seq254 86.0 8e-11 >seq24 Length=306188 Score = 150 bits (166), Expect = 2e-30 Identities = 268/393 (68%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || || |||| ||| ||||| |||||||| || | || || || Sbjct 133464 GCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATT 133405 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||| || || | ||| | ||||| ||| || | |||| || | Sbjct 133404 GGAGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAG 133345 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 133344 ACCGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACC 133285 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||| |||||||||| || || ||||| || || || || || | || Sbjct 133284 GTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGT 133225 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 || || ||||| || || || | || ||||||| || | |||||| || ||| Sbjct 133224 ACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTA 133165 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | || || ||| || | |||| || || || ||||| || Sbjct 133164 GGTCTCCAGGACACGC------------TCGATGTCGTCA---CCCCAGATGCCGACAGC 133120 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGAC 1630454 ||| ||||||| ||||| ||| || ||||| || Sbjct 133119 GACACGCATGATCATGTGCTGAGGTCGCTCAAC 133087 >seq99 Length=88653 Score = 140 bits (154), Expect = 4e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || |||||| |||| |||||| | || |||||||||| Sbjct 33786 CCAACTACCTCGACATCAAGCCCCTTCTCGATGTTGGTTGCAAGACCGTCGCCAACATGA 33727 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 33726 TCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACGTTCAACATCA 33682 >seq112 Length=604763 Score = 136 bits (150), Expect = 5e-26 Identities = 179/246 (73%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | || ||||| Sbjct 339963 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 339904 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| || || | | | Sbjct 339903 TTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACA 339844 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 || || |||||||| |||||||||||||| || ||||||| | | ||||||||| || Sbjct 339843 AGAAGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGA 339784 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | ||||| | |||| ||| ||||| | |||||| | ||| || ||| || Sbjct 339783 AGAGCGCAA--GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGA 339726 Query 868929 TGATCT 868934 |||||| Sbjct 339725 TGATCT 339720 >seq667 Length=356536 Score = 93.3 bits (102), Expect = 5e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 19034 CAAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGC 19093 |||| | ||| |||||||| || ||||| | || || ||| |||||| || || || Sbjct 26526 CAAGGCCAAAGGAGACAGCATTGGAGGCACCATAACATGTGTGGTTCGCAATGTCCCAGC 26467 Query 19094 AGGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTC 19153 || |||| ||||| ||||| ||||| | || || ||| || |||||||| ||| Sbjct 26466 CGGGATCGGAGAGCCATGCTTCGACAAACTTGAAGCAATGCTAGCTCACGCCATTCTGAG 26407 Query 19154 GATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 ||||| ||||||||||| ||||| |||| ||||||| Sbjct 26406 CATCCCCGCCACCAAGGGCGTCGAGTTTGGATCGGGGTTTG 26366 >seq57 Length=294234 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || | ||||| || || Sbjct 145359 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTACTAAGGCCTCCTCT 145300 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| |||||| ||||| ||||| | ||||||||||||||||| || ||| Sbjct 145299 GGCGGCGGCCGGAGCAGCGCCCGTGAGACTATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 145240 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 145239 GAGAAGTGGCT 145229 >seq276 Length=29156 Score = 86.0 bits (94), Expect = 8e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| |||||||||| || ||| |||||||| ||||| || || || ||||| |||| Sbjct 1920 GTCGATGTCGGGGTCGTTGATCAGTCCCTTCCAGCCGACCGTGGTTCGGGGCTTCTCGAG 1979 Query 1727026 ATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTC 1727067 |||||||||||||| || || ||| || || || || ||| Sbjct 1980 GTAGGCGCGCATGACAACACAGAGCTCGCCGGAGAGCTTGTC 2021 >seq254 Length=34532 Score = 86.0 bits (94), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 450778 CGCACCGGCCGCGTTTGGCCGATGCGGTGCACGCGGTCGACGGCCTGCGCCTCGGCAAAC 450837 ||||| |||||| ||||||||| || ||||||||||| ||||| ||||||||||| | Sbjct 6461 CGCACTGGCCGCTTTTGGCCGAGACGATGCACGCGGTCCACGGCTTGCGCCTCGGCTGCC 6520 Query 450838 GGATTGTAGTGCGCGTCCATGA 450859 || ||||| |||| ||||||| Sbjct 6521 GGGTTGTACTGCGGCTCCATGA 6542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107083642209609