Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq24 125 6e-24 seq284 98.7 9e-16 seq388 84.2 2e-11 >seq24 Length=306188 Score = 125 bits (138), Expect = 6e-24 Identities = 463/716 (65%), Gaps = 17/716 (2%) Strand=Plus/Minus Query 139301 GCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 |||| ||||| ||||| || | ||||| ||||||||| |||| ||| || | | Sbjct 133723 GCTCATACTTCTCGTACAGCTTCTCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGC 133664 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| | || |||||||| | ||| |||||||| || ||| ||| |||||||||||| Sbjct 133663 ACTCATTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGAT 133604 Query 139421 CCGGAATCCACAAAGCGAACAGCAAAT--CGCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 | || ||||||| || || | ||| | || |||| || |||||| || ||| Sbjct 133603 CGGGGATCCACAGGGCCAAGAACAAGTCACGAGCGCGGGCT--TCTTCCTTGCCGTGGTT 133546 Query 139479 ACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 || | | ||| ||||||||||| |||||||| || || || || ||||| | Sbjct 133545 CTTGCGCAGATCCAAGAATTCAAAAACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAA 133486 Query 139539 TGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 || || | | ||||| || || ||||||| ||| ||| || ||||| || || Sbjct 133485 AGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACG 133426 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGA 139653 | ||| || | ||| | | || |||||||| | ||| ||| | | | Sbjct 133425 GAGCATAGGAATGACACCATTGGAGGTGCCGTTGGTAC--CGGCAATGTAAGAGCCGGTG 133368 Query 139654 GCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA 139713 || |||| || || |||| ||||| || || | | ||||| || | | ||| Sbjct 133367 GCACGGATTCGGTGCACGTTGAGACCGATGCCTCCTGCCATCTTGGAGATCATGGCACAA 133308 Query 139714 -TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA 139772 || | | || ||||| ||||| |||||||| |||| ||| ||||| ||||| Sbjct 133307 GTCTTG-AGGGTGTCGTAGATACCGTCGATGCTGTCTTCCTTCATGTCAACCAGGAAGCA 133249 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 || || || || || | || || || ||||| || || ||||| ||||| Sbjct 133248 GGAAGACAGCTGAGGCTGAGGGGTACCCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAA 133189 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 || | | ||||| | | ||| || || | | | | | | || || || ||| Sbjct 133188 CAGCTTGCTGGACATGAGGTTGTAGGTCTCCAGGACACGCTCGATGTCGTCACCCCAGAT 133129 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 ||||||| ||| ||||| | ||| || || || || | | | ||| ||||| || Sbjct 133128 GCCGACAGCGACACGCATGATCATGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTT 133069 Query 139953 tttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | || |||||| |||||| |||| ||||| ||||||||||| Sbjct 133068 CAGGAGGTAGGATCG--CTCTAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAATC 133015 >seq284 Length=28030 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || ||||| ||||| || ||| | | Sbjct 19698 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 19757 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || || || || || Sbjct 19758 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 19817 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || ||||| || || |||||||||||| | | | || ||||| ||| Sbjct 19818 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 19877 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| ||||| || ||| |||| Sbjct 19878 ATTCAGAAGGAGTCGACCCTTCACCTGGT 19906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || ||||| ||||| || |||||||||| || || Sbjct 19326 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 19385 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| ||| | | || || || ||||| ||||||||||| || || ||| Sbjct 19386 CAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAATCTACCCTTCAC 19445 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || | ||||| || Sbjct 19446 CTCGTCCTCCGTCTTCGCGGTGG 19468 >seq388 Length=11445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 9458 GATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 9399 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 9398 CGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 9339 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | ||||| ||||| || ||||| || ||| ||| | || || || || Sbjct 9338 ACAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAA 9279 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || ||| ||||| Sbjct 9278 CATCCAGAAGGAGAGCACTCTTCACCTGGTG 9248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893792741560