Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq99 136 6e-26 seq112 125 1e-22 seq634 98.7 2e-14 seq666 95.1 2e-13 >seq99 Length=88653 Score = 136 bits (150), Expect = 6e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||||||||||||||| |||||| | || ||||||||||| |||||| | | Sbjct 33786 CCAACTACCTCGACATCAAGCCCCTTCTCGATGTTGGTTGCAAGACCGTCGCCAACATGA 33727 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| ||||| ||||| || ||||||| Sbjct 33726 TCAAGGGCAAGTCTCCCGAGGAGATCCGAAAGACGTTCAACATCA 33682 >seq112 Length=604763 Score = 125 bits (138), Expect = 1e-22 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| | || ||||| |||||| Sbjct 339954 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 339895 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| |||||||| | | ||| ||||||| || || | | |||| || ||| Sbjct 339894 AAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACAAGAAGACGG 339835 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC--GATGAGCGCCA 794085 ||||| || || || ||||| || ||||||| | | ||||||||| || |||||| | Sbjct 339834 TCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCAA 339775 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | |||| | | ||||| | |||||| | ||| || ||| ||||||||| Sbjct 339774 --GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCT 339720 >seq634 Length=191524 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 2019198 CCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCC 2019257 || || || || || ||| ||||||||||||| || |||||| || | || || | || Sbjct 66972 CCCCCGGGGCGACAAAAGTTGATCATCCTCGACGAAGCCGACAGCATGACATCTGGCGCG 67031 Query 2019258 CAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCC 2019317 ||||| ||||||||| ||| ||||||| || |||| || || | || || | ||| Sbjct 67032 CAGCAAGCCCTCCGACGGACGATGGAAATTTATTCCAATACCACCAGATTCGCATTCGCC 67091 Query 2019318 TGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTT 2019377 |||||| ||| | ||||||| || | || | ||||||||| |||| | | Sbjct 67092 TGCAACCAGTCCAACAAAATCATCGAGCCCTTACAATCGAGATGCGCCATCCTGCGATAT 67151 Query 2019378 GCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAG 2019437 || || ||||||||||| | | ||| ||| |||| ||||| || |||||| Sbjct 67152 GCAAAGCTGACCGACGCCCAAGTGGTGAAGCGGTTGCTTCAGATCATCGAAGCGGAAAAG 67211 Query 2019438 GT 2019439 || Sbjct 67212 GT 67213 >seq666 Length=160323 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| || ||||| ||| |||| || || ||| | | Sbjct 147906 GTACTTGGTGACGGCCTTGGTACCCTCGGACACGGCATGCTTGGCAAGCTCACCGGGGAG 147965 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||| ||||| |||| Sbjct 147966 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 147997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916174384422203