Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq24 134 2e-25
seq112 113 6e-19
>seq24
Length=306188
Score = 134 bits (148), Expect = 2e-25
Identities = 270/395 (68%), Gaps = 19/395 (5%)
Strand=Plus/Plus
Query 259793 GTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGAC 259852
|| ||||| || ||| | ||| ||||||||||||| | ||| | |||| | | ||||
Sbjct 133087 GTTGAGCGACCTCAGCACATGATCATGCGTGTCGCTGTCGGCA--TCTGGGGT-GACGAC 133143
Query 259853 GTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTT 259911
|||| || |||||| |||||| | |||||| ||||| | ||||
Sbjct 133144 ATCGAGCGTGTCCTGGAG------------ACCTACAACCTCATGTC-CAGCAAGCTGTT 133190
Query 259912 CACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGT 259970
||| ||| || | || || || || ||||| || || || | || ||| || || |
Sbjct 133191 CAC-TCACGCTTCACCAACCCTGTTCAATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCT 133249
Query 259971 GCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGT 260030
|||| ||| | |||||||||| || ||||| || ||||| ||||| |||||| |
Sbjct 133250 GCTTCCTGGTTGACATGAAGGAAGACAGCATCGACGGTATCTACGACACCCTCAAGACTT 133309
Query 260031 GCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCG 260090
| || | ||||||||| ||| || ||||||||| | || ||| | || |||
Sbjct 133310 GTGCCATGATCTCCAAGATGGCAGGAGGCATCGGTCTCAACGTGCACCGAATCCGTGCCA 133369
Query 260091 CGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCG 260150
| ||| | ||| | || || ||||||||| ||||| || | | || ||||| || |
Sbjct 133370 CCGGCTCTTACATTGCCGGTACCAACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTG 133429
Query 260151 TTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185
| || ||| |||| || || |||||||||||| ||
Sbjct 133430 TCTTCAACAACACTGCTCGATACGTCGACCAGGGC 133464
Score = 86.0 bits (94), Expect = 9e-11
Identities = 104/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| | | ||| || | ||| ||||||| || | |||| |||||||||||
Sbjct 133765 TGGTATGCCATCTTGGAGGCTCAGACCGAAACCGGCAACCCTTTCATGCTCTACAAGGAC 133824
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214
| ||||| | ||||||||| ||||||||||||||| || ||| ||||||| |
Sbjct 133825 AGCTGCAACCGTAAAAGCAACCAGAAGAACCTGGGCACCATTCG-CAG-TTCCAACCTTT 133882
Query 262215 GCACCGAGATCGTCCAGT 262232
|||| |||||| || |||
Sbjct 133883 GCACTGAGATCATCGAGT 133900
>seq112
Length=604763
Score = 113 bits (124), Expect = 6e-19
Identities = 210/303 (69%), Gaps = 13/303 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||||||||| ||||| |||||||| | || |
Sbjct 339058 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCCGAGGAAATTGATC 339116
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTG--TCG-CTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| |||| |||||||| ||
Sbjct 339117 TGTCCAAGGATCAACACG----ACTGGAACAATCGTCTGACTTCCGACGAGCAGTTCTTT 339172
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| |||| ||||| ||| |||||| ||||||||||| || ||| |||
Sbjct 339173 ATCTCTCACATCCTTGCCTTCTTT-GCCGCCTCTGATGGCATCGTCAATGAAAACTTGGT 339231
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| || || | |||||||| | || ||||| || | || || || || || ||
Sbjct 339232 TGAGCGATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTATGGTTTTCAAAT 339291
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || ||||||||||||||||| |||||||| | || || || |||||| |||||||
Sbjct 339292 CATGATGGAAAACATCCACTCTGAGACCTACTCATTGCTCATTGATACCTACATCAAGGA 339351
Query 1456068 CCC 1456070
||
Sbjct 339352 GCC 339354
Score = 102 bits (112), Expect = 1e-15
Identities = 160/223 (72%), Gaps = 7/223 (3%)
Strand=Plus/Plus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| ||| || ||| | |||||| | ||||| | | |||| | ||||| | |
Sbjct 339720 AGATCATCACCGACGCTGTCAACATCGAGCAGGAGTTCCTGACCGAGGCACTGCC--TTG 339777
Query 1456581 CGCTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGAC 1456638
||||| || ||||||||| | | |||||| || ||||| || ||| || ||||||
Sbjct 339778 CGCTCTTCTGGGCATGAACTCGGAC-CTCATGAAGCAATACATCGAGTTT-GTTGCCGAC 339835
Query 1456639 CGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATG 1456698
|| || || | ||| || ||| || ||||| ||| | | |||||||| ||| |
Sbjct 339836 CGTCTTCTTGTGGCACTTGGCAACG-AGAAGATTTACAAGTCTGCCAACCCCTTCGACTT 339894
Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| ||||| || | |||||||||||||| ||||||
Sbjct 339895 CATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAG 339937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177745902105674
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |