Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq24 140 4e-28
seq112 102 1e-16
>seq24
Length=306188
Score = 140 bits (154), Expect = 4e-28
Identities = 447/689 (65%), Gaps = 12/689 (2%)
Strand=Plus/Minus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
||||| ||||| || | |||| | | || || || ||||| || ||||| | | |
Sbjct 133700 TCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTC 133641
Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636
|| | | | | || || || ||||| || |||||||| ||||| || || | ||
Sbjct 133640 CAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAAC 133581
Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696
| || | | | |||||| || || || || ||||| | || || | |
Sbjct 133580 AAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAA 133521
Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756
| || | ||||| || || || || || || | | || ||||| || || || |||
Sbjct 133520 ACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC 133461
Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816
|| || | ||||| |||||||| || |||| | ||||| ||||| | |||||| ||
Sbjct 133460 TGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAG 133401
Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACC 69875
| || || || || | ||| ||| || | || || || | | | | |||||
Sbjct 133400 GTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGCACGTTGAGACC 133342
Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935
|| ||||||||||| || ||||| | |||||| || | ||||| || ||||| ||
Sbjct 133341 GATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTC 133282
Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995
||||| || || |||||| || || || ||| ||||| ||| | || || ||
Sbjct 133281 GATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACC 133222
Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055
|||||| || | || || || |||||||||||| || || | || ||||| ||
Sbjct 133221 CGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGT 133162
Query 70056 TTCAATAGCTGATTCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111
|| | | || || || || | |||| || | ||||||||||| | ||
Sbjct 133161 CTCCAGGACACGCTCGATGTCGTCACCCCAGATG----CCGACAGCGACACGCATGATCA 133106
Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171
| ||||||||||| || || | || || || |||| ||||| ||| || ||||
Sbjct 133105 TGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAG 133046
Query 70172 TTTTAAACCCAAAATAGTTGTA--TGAAA 70198
| || || || || || | ||| |||||
Sbjct 133045 TCTTGAAGCCGAAGTATTGGTAGTTGAAA 133017
>seq112
Length=604763
Score = 102 bits (112), Expect = 1e-16
Identities = 293/447 (66%), Gaps = 14/447 (3%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| |||||||| || |||||||| || || || ||||| | | || || ||
Sbjct 339960 TTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTC 339901
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
|||||||| || || || || | | || || | || | || | | | ||
Sbjct 339900 TCCATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACAAGA 339841
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT--GA 39503
| | || |||||||| || |||||| ||||| | || | ||||| || | ||
Sbjct 339840 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 339781
Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563
| || || || ||||| || || ||||| | ||||||| || || || || || |
Sbjct 339780 GCGCAA--GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGA 339723
Query 39564 TCG-----ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618
|| ||| | || | | | |||||| | | | | || || | ||
Sbjct 339722 TCTCACGAATGAT-CTGCTTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGG----AGACA 339668
Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678
||||||||| || ||||||||||| | | ||| | ||||| || ||||| | ||
Sbjct 339667 GGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCC 339608
Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738
|||||| ||||||||||| |||||||| || |||| || |||| ||| ||||| ||
Sbjct 339607 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAAT 339548
Query 39739 GCCTTCTACTGCTGCAAATGCAACAAG 39765
|| || || || || || ||||| ||
Sbjct 339547 ACCCTCAACGGCAGCGAAAGCAACCAG 339521
Score = 93.3 bits (102), Expect = 6e-14
Identities = 175/257 (68%), Gaps = 3/257 (1%)
Strand=Plus/Minus
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || ||||||||||| ||| || ||||| || || || |||| || |||| ||
Sbjct 339315 TCAGAGTGGATGTTTTCCATCATGATTTGAAAACCATAGAAGCATCGAGCCTCAGGGATC 339256
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| ||||| | |||| || |||| |||||||| || || |||||| ||||||
Sbjct 339255 TGGACCTCGCCGCTGAATCGCTCAACCAAGTTTTCATTGACGATGCCATCAGAGGCGGCA 339196
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAG 40090
|| || || | | || ||||| | | || |||| |||| || ||||||
Sbjct 339195 AAGAAGGCAAGGATGTGAGAGATAAAGAACTGCTCGTCGGAAGTCAGACGATTGTTCCAG 339136
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | ||| || || | ||| | ||| || || ||||| || || ||||| |||||
Sbjct 339135 TCGTGTTGATCCTTGGACAGATCAATTTCCTCGGCAGTCCAGAAGGAGGCCTCGGCCTTC 339076
Query 40151 TTGTACATGTTCCATAT 40167
|||||||| | ||| ||
Sbjct 339075 TTGTACATTTGCCAGAT 339059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686902987034280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |