Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24 140 4e-28 seq112 102 1e-16 >seq24 Length=306188 Score = 140 bits (154), Expect = 4e-28 Identities = 447/689 (65%), Gaps = 12/689 (2%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| ||||| || | |||| | | || || || ||||| || ||||| | | | Sbjct 133700 TCGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTC 133641 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | | | | || || || ||||| || |||||||| ||||| || || | || Sbjct 133640 CAGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAAC 133581 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | || | | | |||||| || || || || ||||| | || || | | Sbjct 133580 AAGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAA 133521 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | || | ||||| || || || || || || | | || ||||| || || || ||| Sbjct 133520 ACGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTTGTTGCCGCCC 133461 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | ||||| |||||||| || |||| | ||||| ||||| | |||||| || Sbjct 133460 TGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAG 133401 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACC 69875 | || || || || | ||| ||| || | || || || | | | | ||||| Sbjct 133400 GTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGCACGTTGAGACC 133342 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || ||||||||||| || ||||| | |||||| || | ||||| || ||||| || Sbjct 133341 GATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTC 133282 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||||| || || |||||| || || || ||| ||||| ||| | || || || Sbjct 133281 GATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACC 133222 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 |||||| || | || || || |||||||||||| || || | || ||||| || Sbjct 133221 CGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGT 133162 Query 70056 TTCAATAGCTGATTCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 || | | || || || || | |||| || | ||||||||||| | || Sbjct 133161 CTCCAGGACACGCTCGATGTCGTCACCCCAGATG----CCGACAGCGACACGCATGATCA 133106 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 | ||||||||||| || || | || || || |||| ||||| ||| || |||| Sbjct 133105 TGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTAGGATCGCTCTAGAG 133046 Query 70172 TTTTAAACCCAAAATAGTTGTA--TGAAA 70198 | || || || || || | ||| ||||| Sbjct 133045 TCTTGAAGCCGAAGTATTGGTAGTTGAAA 133017 >seq112 Length=604763 Score = 102 bits (112), Expect = 1e-16 Identities = 293/447 (66%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| |||||||| || |||||||| || || || ||||| | | || || || Sbjct 339960 TTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTC 339901 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || | | || || | || | || | | | || Sbjct 339900 TCCATGAAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTGCCAAGTGCCACAAGA 339841 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT--GA 39503 | | || |||||||| || |||||| ||||| | || | ||||| || | || Sbjct 339840 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 339781 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | || || || ||||| || || ||||| | ||||||| || || || || || | Sbjct 339780 GCGCAA--GGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGA 339723 Query 39564 TCG-----ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA 39618 || ||| | || | | | |||||| | | | | || || | || Sbjct 339722 TCTCACGAATGAT-CTGCTTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGG----AGACA 339668 Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 ||||||||| || ||||||||||| | | ||| | ||||| || ||||| | || Sbjct 339667 GGCGAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCC 339608 Query 39679 AGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGAT 39738 |||||| ||||||||||| |||||||| || |||| || |||| ||| ||||| || Sbjct 339607 AGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAAT 339548 Query 39739 GCCTTCTACTGCTGCAAATGCAACAAG 39765 || || || || || || ||||| || Sbjct 339547 ACCCTCAACGGCAGCGAAAGCAACCAG 339521 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || ||||||||||| ||| || ||||| || || || |||| || |||| || Sbjct 339315 TCAGAGTGGATGTTTTCCATCATGATTTGAAAACCATAGAAGCATCGAGCCTCAGGGATC 339256 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || ||||| | |||| || |||| |||||||| || || |||||| |||||| Sbjct 339255 TGGACCTCGCCGCTGAATCGCTCAACCAAGTTTTCATTGACGATGCCATCAGAGGCGGCA 339196 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAG 40090 || || || | | || ||||| | | || |||| |||| || |||||| Sbjct 339195 AAGAAGGCAAGGATGTGAGAGATAAAGAACTGCTCGTCGGAAGTCAGACGATTGTTCCAG 339136 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||| || || | ||| | ||| || || ||||| || || ||||| ||||| Sbjct 339135 TCGTGTTGATCCTTGGACAGATCAATTTCCTCGGCAGTCCAGAAGGAGGCCTCGGCCTTC 339076 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 339075 TTGTACATTTGCCAGAT 339059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902987034280