Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24 219 5e-52 seq112 100 4e-16 >seq24 Length=306188 Score = 219 bits (242), Expect = 5e-52 Identities = 1132/1786 (63%), Gaps = 55/1786 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || |||||||| || |||||||| | | ||||| || Sbjct 134819 CGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTGGTG 134760 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || || |||| || ||| | || || |||||||||||| Sbjct 134759 ATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATGAAG 134700 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || ||||| || | ||| | | || | | | || | |||||||| ||| Sbjct 134699 GCACCACGATCGGCGGACATTTGGAGGACCTGG--CGTTGGGAAATCTCCCACACCGTCT 134642 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| |||||| || || || || | ||| || ||||| || || | | Sbjct 134641 TGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTCAG 134582 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 | ||| | | |||||| | | ||||| | || || | | || |||| || || Sbjct 134581 AAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTTCAAGA 134522 Query 118135 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 118194 | || ||||| |||||||| || ||| || | | | ||||| || | | Sbjct 134521 GCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGAGG 134462 Query 118195 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 118254 | || ||||| ||||| || || || |||| ||| || | || ||| || ||||| | Sbjct 134461 TATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAG 134402 Query 118255 GTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCC 118314 | || | || | |||||| || | ||| | ||| ||| | || || | |||| Sbjct 134401 GGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCGAAGGGTCTCCC 134342 Query 118315 AGTCGTA---GTTG-AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||| | || | || | || | | | |||||||||||||||||||||||| | Sbjct 134341 AGTCCCAAAGGTCGGAG----GGCTTCACGTTCCACATATCAAACTGGAGGATACCCTCA 134286 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAG 118427 || ||||| || |||| || | || || ||||| ||| || | || | ||| Sbjct 134285 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCACCGAG 134226 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 || | | || ||||| || || || ||||| || | |||| | ||| Sbjct 134225 GCCGTC---AAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCC 134169 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 ||| ||| || || | | || | || |||| || ||||| ||||||||| Sbjct 134168 TCGGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCG 134109 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGATAAAAA 118604 | ||||| || || || | ||| || || || || ||| | | || || Sbjct 134108 ACACCAATGGGTCGGTGACGCATGTTGCTGTTGCGGGC---CTCGATGATGGGGTAGTGG 134052 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || ||||||| | | || | || | |||||||| ||||| || || ||||| Sbjct 134051 TTGACGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTC 133992 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG----GCGATTGACGC 118720 | | | || | | || ||| | | | || || ||||||| || | ||| || Sbjct 133991 TGGAAGTCGTAGCAGCC---CTCGTTGTAGTCA-ACAAAGGAAGGCAGAGCCAATGATGC 133936 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 ||||| || |||| | |||||| | || |||||| || || || ||||| | ||| Sbjct 133935 GAGATTGCAAACAGCGACCTCATCGGGAGCACAGTACTCGATGATCTCAGTGCAAAGGTT 133876 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840 ||||| ||||||||||| |||||| || || || ||| || |||||||| Sbjct 133875 GGAACTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTA 133816 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 118899 |||||| | || | || || || || || | || | || || | ||| | | || | Sbjct 133815 GAGCATGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTG 133756 Query 118900 CAGCTGGCACAGTGGCGTTGG---CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 || || ||| ||| || || | | ||| ||||| ||| || | Sbjct 133755 GGCCTT---CA-TGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTCT 133700 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 | ||||| ||||| | || | ||||| || || || ||||| | ||||| || Sbjct 133699 CGAACTCATCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCC 133640 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | || || ||| || ||||||||||| || || |||||||| || ||| |||| | Sbjct 133639 AGTCGCCGTTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACA 133580 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || ||| ||| |||||||| | || || || |||| ||||| || || | | Sbjct 133579 AGTCACGAGCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAA 133520 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACCAG 119190 || |||||||| || || ||||| | |||| | || ||| | | || Sbjct 133519 CGTCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAAGCACCGGGTCGCTT--GTTG-CCGC 133463 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||||| || || | |||||| ||| || ||||| ||||| ||||||| ||||| || Sbjct 133462 CCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGG 133403 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 | ||| || || || ||| ||| |||| | || ||| | || | || Sbjct 133402 AGGTGCCGTTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGAGAC 133343 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 | || || |||||| ||| ||||| || || | |||| || ||||||| || | Sbjct 133342 CGATGCCTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGT 133283 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTAC 119430 |||| ||| |||| | | | ||||||||| |||| |||||| || |||| Sbjct 133282 CGATGCTGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTAC 133223 Query 119431 CAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTA 119488 | || ||||| || ||||||| ||||| |||||| |||| |||||| || ||| Sbjct 133222 CCGCATTGAACAGGGTTGGTGAAGCGTGAGTGAACAG--CTTGCTGGACATGAGGTTGTA 133165 Query 119489 GGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 |||||||| ||| || | ||||| || || || |||| | ||| ||||| | || Sbjct 133164 GGTCTCCAGGACACGCTCG-ATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCA 133106 Query 119548 TGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 119593 ||| || ||| || | | | ||||||| | || ||||||| Sbjct 133105 TGTGCTGAGGTCGCTCAACAATCTTGCCATCGATCTTCAGGAGGTA 133060 >seq112 Length=604763 Score = 100 bits (110), Expect = 4e-16 Identities = 300/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 339954 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 339895 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || |||| | || | |||| || ||||| Sbjct 339894 AAGTCGAAGGGGTTGGCAGACTTGTAAATCTTCTCGTTG-CCAAGTGCCACAAGAAGACG 339836 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | || |||| ||||| | ||| || |||||||| || | || || Sbjct 339835 GTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGAGCGCA 339776 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| ||| |||| ||||| || | ||| | | Sbjct 339775 AGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATCTCACG 339716 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAA-----AGTCTTGAAGAGTTCCACGGCAAAC 130021 |||| ||| | ||| | || || ||| ||| | | ||| || ||| || Sbjct 339715 AATGATCTGCTTGCTGGCTCGGTTCTTCAAGTGAGAGTGTAGGAGA----CA-GGCGAAG 339661 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || ||||| ||||| || ||||| || || ||||| || || |||||| Sbjct 339660 TCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGGCATG 339601 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||||| |||||||| | |||||| || | | | ||| | ||| |||||| || ||||| Sbjct 339600 AGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAA-GCACCACTGAAGAAAATACCCTC 339542 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || ||||| |||| ||||||| ||||| || Sbjct 339541 AACGGCAGCGAAAGCAACCAGACGCTGGGCAAAAGA 339506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429966492120