Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 187 8e-42 seq284 156 1e-32 seq388 100 9e-16 >seq10 Length=142094 Score = 187 bits (206), Expect = 8e-42 Identities = 526/803 (66%), Gaps = 6/803 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || ||||| ||||| | ||| ||| || | ||||| || || | Sbjct 85081 CCCGAGGAGATCTCATCCATGGTCCTCACTAAGATGCGTGAGACCGCTGAGGCCTACCTC 85140 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 ||||| || || | | ||||| | ||||| || ||||| || || ||| |||||| Sbjct 85141 GGTGAGACCGTTAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATAGCCAGCGC 85200 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || | || || || |||| || || || Sbjct 85201 CAGGCTACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGAATCATCAACGAG 85260 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || ||||| || || || || || | || ||| ||| || | Sbjct 85261 CCCACTGCTGCCGCCATTGCCTACGGTCTCGACAAGAAGATTGAGGGTGAACGCAACGTC 85320 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | ||||||||||| || ||||| || || || || | || ||||| Sbjct 85321 CTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTTTCTCTCCTCACCATCGAGGAGGGT 85380 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || ||||||||||||| || || || ||||| || || || || || Sbjct 85381 ATCTTCGAGGTCAAGTCAACTGCTGGTGACACTCACCTGGGTGGCGAGGACTTCGACAAC 85440 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 ||||||||| || |||||||| ||||| || | |||| ||||| | ||| ||| Sbjct 85441 CGTCTCGTTAACCACTTTGTTAATGAATTCAAAAG-AAAGCATAAAA--AAGATTTGAGC 85497 Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | ||| | | || | || || || | ||||| || || ||||| ||||| | | Sbjct 85498 TCCAATGTTCGCGCGCTTCGACGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACTCTT 85557 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || || | | || |||||||| || || || ||||| || || | || |||| Sbjct 85558 TCCTCCTCCGCGCAGACCTCTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTAC 85617 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128 | || || || || ||||| || || || | || |||||| || || | || || Sbjct 85618 ACCTCCATCACCCGAGCTCGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACTATC 85677 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 | || || || || | || || ||||| || | | | | || | Sbjct 85678 CAGCCCGTCGACCGTGTCCTCGCCGACGCGAAAATCGATAAGAGCCTCGTCCACGAGATC 85737 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | || ||||| || || ||||| || || || || | | | || | || Sbjct 85738 GTCCTCGTCGGTGGCTCCACCCGTATCCCCCGTGTCCAGAAGCTCATTACCGACTACTTC 85797 Query 350249 AATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCT 350308 || ||||| || || | || || || || ||||| |||||||| || ||||| || Sbjct 85798 AACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCC 85857 Query 350309 GTTCAGGCATCTATTTTATCTGG 350331 |||||||| | ||| | ||||| Sbjct 85858 GTTCAGGCCGCCATTCTGTCTGG 85880 >seq284 Length=28030 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || |||||||| |||||||| ||||| || || || || || || Sbjct 19700 CATACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTC 19641 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 19640 GGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGG 19581 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || |||| || |||| || Sbjct 19580 GGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTC 19521 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| | || || ||||| || ||||| Sbjct 19520 CACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 19470 Score = 134 bits (148), Expect = 4e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | ||||| || ||||| || ||||| || ||||| || || Sbjct 19931 TTACTGACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTA 19872 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||| | || || ||||| || || || || |||||||| || || || ||||| || Sbjct 19871 ATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTC 19812 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 || || || || || || || ||||| || | || ||||| || || | |||||| | Sbjct 19811 TGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGA 19752 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || |||| ||||| ||||| || || || || ||||||||||| Sbjct 19751 TTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698 Score = 109 bits (120), Expect = 2e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || || ||||| ||||| || ||||| || || | Sbjct 19476 TTTGCATACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 19417 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 19416 AGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 19357 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | ||| || | Sbjct 19356 CGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAG 19297 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || || | ||||| || || || || || || Sbjct 19296 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 19254 >seq388 Length=11445 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || |||||||| ||| || || || || || || Sbjct 9230 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 9289 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||||||||| || || || || ||||| || || || || || || || Sbjct 9290 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGG 9349 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||| || || ||||| || || | || || || || || | || || | || || Sbjct 9350 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 9409 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 9410 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 9457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515241256588631