Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq10 187 8e-42
seq284 156 1e-32
seq388 100 9e-16
>seq10
Length=142094
Score = 187 bits (206), Expect = 8e-42
Identities = 526/803 (66%), Gaps = 6/803 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || ||||| ||||| | ||| ||| || | ||||| || || |
Sbjct 85081 CCCGAGGAGATCTCATCCATGGTCCTCACTAAGATGCGTGAGACCGCTGAGGCCTACCTC 85140
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
||||| || || | | ||||| | ||||| || ||||| || || ||| ||||||
Sbjct 85141 GGTGAGACCGTTAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATAGCCAGCGC 85200
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || |||||| || | || || || |||| || || ||
Sbjct 85201 CAGGCTACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGAATCATCAACGAG 85260
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||||||||| || ||||| || || || || || | || ||| ||| || |
Sbjct 85261 CCCACTGCTGCCGCCATTGCCTACGGTCTCGACAAGAAGATTGAGGGTGAACGCAACGTC 85320
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
|| || || ||| | ||||||||||| || ||||| || || || || | || |||||
Sbjct 85321 CTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTTTCTCTCCTCACCATCGAGGAGGGT 85380
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || ||||||||||||| || || || ||||| || || || || ||
Sbjct 85381 ATCTTCGAGGTCAAGTCAACTGCTGGTGACACTCACCTGGGTGGCGAGGACTTCGACAAC 85440
Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950
||||||||| || |||||||| ||||| || | |||| ||||| | ||| |||
Sbjct 85441 CGTCTCGTTAACCACTTTGTTAATGAATTCAAAAG-AAAGCATAAAA--AAGATTTGAGC 85497
Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008
| ||| | | || | || || || | ||||| || || ||||| ||||| | |
Sbjct 85498 TCCAATGTTCGCGCGCTTCGACGTCTCCGCACTGCCTGCGAGCGTGCCAAGCGAACTCTT 85557
Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068
|| || | | || |||||||| || || || ||||| || || | || ||||
Sbjct 85558 TCCTCCTCCGCGCAGACCTCTATCGAGATCGACTCTCTCTTCGAGGGTATTGACTTCTAC 85617
Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128
| || || || || ||||| || || || | || |||||| || || | || ||
Sbjct 85618 ACCTCCATCACCCGAGCTCGTTTCGAGGAGCTCTGCCAGGATCTCTTCCGATCCACTATC 85677
Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188
| || || || || | || || ||||| || | | | | || |
Sbjct 85678 CAGCCCGTCGACCGTGTCCTCGCCGACGCGAAAATCGATAAGAGCCTCGTCCACGAGATC 85737
Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248
|| | || ||||| || || ||||| || || || || | | | || | ||
Sbjct 85738 GTCCTCGTCGGTGGCTCCACCCGTATCCCCCGTGTCCAGAAGCTCATTACCGACTACTTC 85797
Query 350249 AATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCT 350308
|| ||||| || || | || || || || ||||| |||||||| || ||||| ||
Sbjct 85798 AACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCC 85857
Query 350309 GTTCAGGCATCTATTTTATCTGG 350331
|||||||| | ||| | |||||
Sbjct 85858 GTTCAGGCCGCCATTCTGTCTGG 85880
>seq284
Length=28030
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | || |||||||| |||||||| ||||| || || || || || ||
Sbjct 19700 CATACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTC 19641
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| || || || ||||| ||||| || ||||| || ||||| || || ||||| || ||
Sbjct 19640 GGACAAGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGG 19581
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| || | || ||||| || |||| || |||| ||
Sbjct 19580 GGGGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTC 19521
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| ||||| | || || ||||| || |||||
Sbjct 19520 CACCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 19470
Score = 134 bits (148), Expect = 4e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | ||||| || ||||| || ||||| || ||||| || ||
Sbjct 19931 TTACTGACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTA 19872
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|||| | || || ||||| || || || || |||||||| || || || ||||| ||
Sbjct 19871 ATCACTCAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTC 19812
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|| || || || || || || ||||| || | || ||||| || || | |||||| |
Sbjct 19811 TGGGGGGATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGA 19752
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || |||| ||||| ||||| || || || || |||||||||||
Sbjct 19751 TTCGACCTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698
Score = 109 bits (120), Expect = 2e-18
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || || || ||||| ||||| || ||||| || || |
Sbjct 19476 TTTGCATACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 19417
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||||| ||||| ||||| || || ||||||||||| || || || || |
Sbjct 19416 AGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 19357
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || ||||| || || | || ||||| || || | ||| || |
Sbjct 19356 CGGGGGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAG 19297
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || || | ||||| || || || || || ||
Sbjct 19296 ACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 19254
>seq388
Length=11445
Score = 100 bits (110), Expect = 9e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || |||||||| ||| || || || || || ||
Sbjct 9230 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 9289
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||||| ||||||||||| || || || || ||||| || || || || || || ||
Sbjct 9290 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGG 9349
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|||||| || || ||||| || || | || || || || || | || || | || ||
Sbjct 9350 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 9409
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || || ||||||||
Sbjct 9410 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 9457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515241256588631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |