Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq24 295 7e-75
seq118 147 2e-30
seq112 96.9 4e-15
>seq24
Length=306188
Score = 295 bits (326), Expect = 7e-75
Identities = 430/604 (71%), Gaps = 4/604 (1%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| ||||| | || ||| ||||||||| | |||||||
Sbjct 133096 CCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAGCGTGTC 133155
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
| ||||| ||| || | ||| | ||| || || ||||| | ||||||||||||
Sbjct 133156 CTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTCACTCACGCTTCACCAACCCTGTTC 133215
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
|| || ||||| ||| |||||| |||| |||||||||||| | |||||||| |||
Sbjct 133216 AATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAAGAC 133275
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|||||||| |||||||| || |||||| |||||| ||||||||| | | ||
Sbjct 133276 AGCATCGACGGTATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAGATGGCAGGA 133335
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
|| |||||| || || ||| | ||| ||||||| | |||| | || || || |
Sbjct 133336 GGCATCGGTCTCAACGTGCACCGAA--TCCGTGCCACCGGCTCTTACATTGCCGGTACCA 133393
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
||||| | || |||| || | ||||||||||| |||||||||||||| || || ||||
Sbjct 133394 ACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTCGATACG 133453
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
|| ||||||| || ||||| || | |||||||| ||||| ||||| |||||||
Sbjct 133454 TCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTGGCACG 133513
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
||||| || | || || | || ||||| ||| || || | ||||| ||| |
Sbjct 133514 CCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCGCGCTC 133573
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717
||||| |||| || |||||||| || || || |||||| | || |||||| |||
Sbjct 133574 GTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAAGAACG 133633
Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777
|| ||| || |||||||| || ||||||||||| || | | ||||||||| |
Sbjct 133634 GCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGGTGATG 133693
Query 53778 AGTT 53781
||||
Sbjct 133694 AGTT 133697
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
|| ||||||||||| | |||||| ||||| ||||| || |||||| |||| | | ||
Sbjct 134686 GCCGATCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTCAACATCCACATGAAAGACCCC 134745
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
|| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 134746 ACAATGGGCAAGATCACCAGCATGCACTTCGCAGGCTGGAAGCTCGGTCTCAAGACCGGC 134805
Query 55907 ATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 134806 ATGTACTACCTCCGCACC 134823
>seq118
Length=84147
Score = 147 bits (162), Expect = 2e-30
Identities = 221/312 (71%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350
|||| | |||||||| ||| ||||||||| || |||||||| ||| || ||||| |
Sbjct 74542 ACGGGGAAAGGCGAGTAAAAGTGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTC 74601
Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410
| | ||||| | ||| || ||||| | ||| | |||||| | ||| || ||||| |
Sbjct 74602 GAGAGCCGAAGTTTCCGCTTGGCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCT 74661
Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470
| |||||| | || || || || || ||||||||||| || | ||| || |
Sbjct 74662 GGGCCAAGCCAATGATGGTTTGCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTT 74721
Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528
| | || || || || || | | |||||||| | || ||||| | ||| ||||||
Sbjct 74722 CGGAAACATAACCAGCTAGTTCAACCACCTTCTTATCCTTGACG--ATGTTTCTCTTGAA 74779
Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588
||||||||| || ||||||||||||| ||||||| ||||| ||| ||| || ||
Sbjct 74780 GCAGGCATACATGACCTTGCGCTGACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGA 74839
Query 117589 ACGCTTGATGTC 117600
|||| || ||||
Sbjct 74840 ACGCATGTTGTC 74851
Score = 93.3 bits (102), Expect = 5e-14
Identities = 194/289 (67%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 152036 TGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGG 152095
|||| || | || || ||||| ||| || || || || | || || | ||| |
Sbjct 74563 TGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTCGAGAGCCGAAGTTTCCGCTTG 74622
Query 152096 GCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGC 152155
||||||| ||||| |||||| | ||| ||||| ||||| ||||| | || ||
Sbjct 74623 GCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCTGGGCCAAGCCAATGATGGTTT 74682
Query 152156 CCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACT 152215
||| ||| |||||||| ||||| || | ||| || || | | || || || | |
Sbjct 74683 GCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTTCGGAAACATAACCAGCTAGTT 74742
Query 152216 GCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCT 152275
|||||||| | ||| | | ||| |||||| ||||| || || ||||||||||
Sbjct 74743 CAACCACCTTCTTATCCTTGACGATGTTTCTCTTGAAGCAGGCATACATGACCTTGCGCT 74802
Query 152276 GGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
| || ||||| || || | ||| |||||| |||||| || ||||
Sbjct 74803 GACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGAACGCATGTTGTC 74851
>seq112
Length=604763
Score = 96.9 bits (106), Expect = 4e-15
Identities = 283/426 (66%), Gaps = 20/426 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|||||||| || ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 339954 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 339895
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCC---ATG 74576
||||||| ||||| | |||||| |||||| |||| ||||| |
Sbjct 339894 AAGTCGAAGGGGTTGGCAGACTTGTAAAT---CTTCTCGTTGCCAA---GTGCCACAAGA 339841
Query 74577 AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
|| || || || ||||| | ||||| ||| |||| ||| | |||||| | ||
Sbjct 339840 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 339781
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696
||| |||||||||||||| | ||||| ||| | | | ||| || |||
Sbjct 339780 GCGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATC 339721
Query 74697 TTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGT-AAAGCGTCACGGC 74752
| ||||| ||| ||| ||| | || | ||| |||||||| | | | || |||
Sbjct 339720 TCACGAATGATCTGCTTG--CTGGCTCGGTT-CTTCAAGTGAGAGTGTAGGAGACA-GGC 339665
Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812
|| || ||| ||| ||||| | || | || || || || | | ||||||
Sbjct 339664 GAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGG 339605
Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872
||| || ||||||||||| | ||| ||||||| ||| | |||||||||||| || ||
Sbjct 339604 CATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACC 339545
Query 74873 TTCGAC 74878
|| ||
Sbjct 339544 CTCAAC 339539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547211369184600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |