Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24 295 7e-75 seq118 147 2e-30 seq112 96.9 4e-15 >seq24 Length=306188 Score = 295 bits (326), Expect = 7e-75 Identities = 430/604 (71%), Gaps = 4/604 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| ||||| | || ||| ||||||||| | ||||||| Sbjct 133096 CCTCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGTGACGACATCGAGCGTGTC 133155 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 | ||||| ||| || | ||| | ||| || || ||||| | |||||||||||| Sbjct 133156 CTGGAGACCTACAACCTCATGTCCAGCAAGCTGTTCACTCACGCTTCACCAACCCTGTTC 133215 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 || || ||||| ||| |||||| |||| |||||||||||| | |||||||| ||| Sbjct 133216 AATGCGGGTACCCCTCAGCCTCAGCTGTCTTCCTGCTTCCTGGTTGACATGAAGGAAGAC 133275 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 |||||||| |||||||| || |||||| |||||| ||||||||| | | || Sbjct 133276 AGCATCGACGGTATCTACGACACCCTCAAGACTTGTGCCATGATCTCCAAGATGGCAGGA 133335 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 || |||||| || || ||| | ||| ||||||| | |||| | || || || | Sbjct 133336 GGCATCGGTCTCAACGTGCACCGAA--TCCGTGCCACCGGCTCTTACATTGCCGGTACCA 133393 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | || |||| || | ||||||||||| |||||||||||||| || || |||| Sbjct 133394 ACGGCACCTCCAATGGTGTCATTCCTATGCTCCGTGTCTTCAACAACACTGCTCGATACG 133453 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || ||||||| || ||||| || | |||||||| ||||| ||||| ||||||| Sbjct 133454 TCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTCGCCATTTACCTTGAGCCCTGGCACG 133513 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 ||||| || | || || | || ||||| ||| || || | ||||| ||| | Sbjct 133514 CCGACGTTTTTGAATTCTTGGATCTGCGCAAGAACCACGGCAAGGAAGAAGCCCGCGCTC 133573 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 ||||| |||| || |||||||| || || || |||||| | || |||||| ||| Sbjct 133574 GTGACTTGTTCTTGGCCCTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAGAAGAACG 133633 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777 || ||| || |||||||| || ||||||||||| || | | ||||||||| | Sbjct 133634 GCGACTGGACTCTCATGTGCCCCAATGAGTGCCCCGGGCTTGCTGATTGCTACGGTGATG 133693 Query 53778 AGTT 53781 |||| Sbjct 133694 AGTT 133697 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || ||||||||||| | |||||| ||||| ||||| || |||||| |||| | | || Sbjct 134686 GCCGATCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTCAACATCCACATGAAAGACCCC 134745 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 134746 ACAATGGGCAAGATCACCAGCATGCACTTCGCAGGCTGGAAGCTCGGTCTCAAGACCGGC 134805 Query 55907 ATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 134806 ATGTACTACCTCCGCACC 134823 >seq118 Length=84147 Score = 147 bits (162), Expect = 2e-30 Identities = 221/312 (71%), Gaps = 4/312 (1%) Strand=Plus/Plus Query 117291 ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGAC 117350 |||| | |||||||| ||| ||||||||| || |||||||| ||| || ||||| | Sbjct 74542 ACGGGGAAAGGCGAGTAAAAGTGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTC 74601 Query 117351 GCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTT 117410 | | ||||| | ||| || ||||| | ||| | |||||| | ||| || ||||| | Sbjct 74602 GAGAGCCGAAGTTTCCGCTTGGCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCT 74661 Query 117411 GAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCT 117470 | |||||| | || || || || || ||||||||||| || | ||| || | Sbjct 74662 GGGCCAAGCCAATGATGGTTTGCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTT 74721 Query 117471 CCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAG 117528 | | || || || || || | | |||||||| | || ||||| | ||| |||||| Sbjct 74722 CGGAAACATAACCAGCTAGTTCAACCACCTTCTTATCCTTGACG--ATGTTTCTCTTGAA 74779 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGA 117588 ||||||||| || ||||||||||||| ||||||| ||||| ||| ||| || || Sbjct 74780 GCAGGCATACATGACCTTGCGCTGACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGA 74839 Query 117589 ACGCTTGATGTC 117600 |||| || |||| Sbjct 74840 ACGCATGTTGTC 74851 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 152036 TGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGG 152095 |||| || | || || ||||| ||| || || || || | || || | ||| | Sbjct 74563 TGTAACGAGGACTCGCAGCATCTGAGCCGCCGGCAAGTCGAGAGCCGAAGTTTCCGCTTG 74622 Query 152096 GCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGC 152155 ||||||| ||||| |||||| | ||| ||||| ||||| ||||| | || || Sbjct 74623 GCTCGAGACAGTTGATGTTGTTTGAGCCGACGAAGTTCTGGGCCAAGCCAATGATGGTTT 74682 Query 152156 CCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACT 152215 ||| ||| |||||||| ||||| || | ||| || || | | || || || | | Sbjct 74683 GCTGAAGAGAAGCTTCACCATGGTGGTATGACGTTTGTTCGGAAACATAACCAGCTAGTT 74742 Query 152216 GCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCT 152275 |||||||| | ||| | | ||| |||||| ||||| || || |||||||||| Sbjct 74743 CAACCACCTTCTTATCCTTGACGATGTTTCTCTTGAAGCAGGCATACATGACCTTGCGCT 74802 Query 152276 GGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 | || ||||| || || | ||| |||||| |||||| || |||| Sbjct 74803 GACCGGGCTTCAACCCATCGAGGACGGAAGGAATAGAACGCATGTTGTC 74851 >seq112 Length=604763 Score = 96.9 bits (106), Expect = 4e-15 Identities = 283/426 (66%), Gaps = 20/426 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| || ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 339954 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 339895 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCC---ATG 74576 ||||||| ||||| | |||||| |||||| |||| ||||| | Sbjct 339894 AAGTCGAAGGGGTTGGCAGACTTGTAAAT---CTTCTCGTTGCCAA---GTGCCACAAGA 339841 Query 74577 AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 || || || || ||||| | ||||| ||| |||| ||| | |||||| | || Sbjct 339840 AGACGGTCGGCAACAAACTCGATGTATTGCTTCATGAGGTCCGAGTTCATGCCCAGAAGA 339781 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696 ||| |||||||||||||| | ||||| ||| | | | ||| || ||| Sbjct 339780 GCGCAAGGCAGTGCCTCGGTCAGGAACTCCTGCTCGATGTTGACAGCGTCGGTGATGATC 339721 Query 74697 TTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGT-AAAGCGTCACGGC 74752 | ||||| ||| ||| ||| | || | ||| |||||||| | | | || ||| Sbjct 339720 TCACGAATGATCTGCTTG--CTGGCTCGGTT-CTTCAAGTGAGAGTGTAGGAGACA-GGC 339665 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || ||| ||| ||||| | || | || || || || | | |||||| Sbjct 339664 GAAGTCGGTGTGCAGGCCCTCATCACGAGAAATGAGCTCGTTGGAGAATGTCAAGCCAGG 339605 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || ||||||||||| | ||| ||||||| ||| | |||||||||||| || || Sbjct 339604 CATGAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAAGCACCACTGAAGAAAATACC 339545 Query 74873 TTCGAC 74878 || || Sbjct 339544 CTCAAC 339539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211369184600