Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 329 4e-85 seq284 176 5e-39 seq388 138 1e-27 seq342 114 1e-20 seq118 111 2e-19 >seq24 Length=306188 Score = 329 bits (364), Expect = 4e-85 Identities = 1130/1741 (65%), Gaps = 43/1741 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| || ||||||||| | |||||| Sbjct 134822 GTGCGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTG 134763 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | |||||||| | |||| |||||| || |||||||||||| |||| Sbjct 134762 GTGATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATG 134703 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCATACTGT 80216 || || |||||||| || | ||||| | | || | || | | ||| ||||| || || Sbjct 134702 AAGGCACCACGATCGGCGGACATTTGGAGGACCTGGCGTTGG-GAAATCTCCCACACCGT 134644 Query 80217 ACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTT 80276 || | | || || || ||||||| | | | | | ||||| || Sbjct 134643 CTTGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTC 134584 Query 80277 TACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333 ||| | || |||| || || ||| | || | | ||| || |||| Sbjct 134583 AGAAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTTCAA 134524 Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393 || ||||| | ||||| || || ||| || ||| | || | ||| | Sbjct 134523 GAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGA 134464 Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 || |||||||| || ||||| || || |||||||| | || || || || ||||| Sbjct 134463 GGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCAT 134404 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGA 80513 ||| ||| | || || || | ||||||| ||| | | |||||| || | Sbjct 134403 AGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCG-AAGGGTCT 134345 Query 80514 CCAAAAATCAAC---CCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568 || | ||| | | ||| | || |||||| || ||| | ||| ||||| Sbjct 134344 CCCAGTCCCAAAGGTCGGAGGGCT-TCACGTTCCACATATCAAACTGGAGGATACCCTCA 134286 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGA 80627 || || || || ||| ||| | ||| || |||||| ||| || || | ||| ||| Sbjct 134285 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCAC-CGA 134227 Query 80628 CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTG 80687 || | | || ||||| |||||| |||||||| |||||||| | || |||| Sbjct 134226 GGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTC 134167 Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 ||| ||||| | || || | || ||| | ||||| || ||||| || |||| Sbjct 134166 GGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAC 134107 Query 80748 GGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806 | || || ||||| ||| |||| | | || |||||| || ||||| ||| Sbjct 134106 ACCAATGGGTCGGTGACGCATGTTGCTGTTGCG-GGCCTCGATGATGGGGTAGTGGTTGA 134048 Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAA 80866 ||||| | ||||| |||||| |||||| |||| || || || || ||||| | Sbjct 134047 CGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGA 133988 Query 80867 AGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGC 80920 ||||| | | | | || ||||| | || || || || || ||||||| Sbjct 133987 AGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGATGCGAGATTGC 133928 Query 80921 ACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAG 80977 | || || ||||| || |||| | ||| ||||| ||| || ||||| | || ||| Sbjct 133927 AAACAGCGACCTCATCGGGAGCA-CAGTA--CTCGATGATCTCAGTGCAAAGGTTGGAAC 133871 Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 ||| || |||||||| |||||||| || |||||| |||||||||| || Sbjct 133870 TGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCA 133811 Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 || | ||| | ||||| ||| ||| | || | |||||| | ||| | || | |||| Sbjct 133810 TGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTGGGCCT 133751 Query 81098 TGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTG 81156 | | |||||| |||||| | | ||||||| |||| |||||| ||||||| Sbjct 133750 TCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTC-TCGAACTCA 133692 Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216 |||||| |||| || | |||||||| || |||||||| || ||||||| | Sbjct 133691 TCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCG 133632 Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 | ||||| ||| ||||||||| || |||||||| ||||| ||||| ||| || Sbjct 133631 TTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGA 133572 Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336 ||| || || || | || ||||| ||||| || | || || | | ||| || Sbjct 133571 GCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCG 133512 Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTG 81390 ||||| ||||| || || | ||||| | || | | || ||| ||||||| | Sbjct 133511 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACC---GGGTCGCTTGTTGCCGCCCTGGTCG 133455 Query 81391 ACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCG 81450 ||||| || ||||| ||| || ||||| | |||||| |||| ||||| || ||| Sbjct 133454 ACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCG 133395 Query 81451 TTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGC 81508 || ||||| | || || || |||| || | | ||| |||| ||||||||| Sbjct 133394 TTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGC 133337 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 | |||| | ||| || ||| ||||| || | ||| || || || || ||||||| Sbjct 133336 CTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGC 133277 Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628 | |||| |||||||||| || ||| ||| |||| |||||| | || |||| Sbjct 133276 TGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCAT 133217 Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCT 81688 ||||||| ||||| | |||||| |||| | | ||||| |||| ||||| ||| Sbjct 133216 TGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCA 133157 Query 81689 TGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGG 81748 ||| || || |||||||| || |||| ||| |||||||| | ||||| ||| | Sbjct 133156 GGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGAG 133097 Query 81749 G 81749 | Sbjct 133096 G 133096 >seq284 Length=28030 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || || ||||| ||||| |||| ||| | Sbjct 19254 GTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGAC 19313 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || || |||||||||||||| || || || ||||| ||||| || || Sbjct 19314 AATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATC 19373 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| | ||||| || ||||||||||| Sbjct 19374 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 19433 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| || ||| | |||||||||||||| Sbjct 19434 TCTACCCTTCACCTCGTCCTCCGTCTTCGCGGTGG 19468 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | ||||| |||||||| || |||||||| |||||| Sbjct 19470 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 19529 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || |||||||| |||||||| || || ||||||||| Sbjct 19530 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 19589 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||||| |||||| | | ||||| || Sbjct 19590 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 19649 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || || | || ||||| ||||| Sbjct 19650 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGG 19696 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 19698 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 19757 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 19758 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 19817 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||||||||| || ||||||| ||| ||||| || || || Sbjct 19818 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 19877 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || ||||| || || | ||||| || || || || Sbjct 19878 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGTCA 19927 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||||||||||| ||||| || | ||| | || | ||| | Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 19041 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| || |||||||| || || || ||||| ||| Sbjct 19042 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 19101 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| ||||| || || Sbjct 19102 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 19161 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || || || Sbjct 19162 CTCGTCCTCCGCCTCCGTGGAGG 19184 >seq388 Length=11445 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || |||||||| ||||| Sbjct 9457 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 9398 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 9397 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAA 9338 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || || || || ||||| || || |||| || ||||| ||| ||||| || Sbjct 9337 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGC-GACTACAA 9279 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||| || || | || || || ||||| Sbjct 9278 CATCCAGAAGGAGAGCACTCTTCACCTGGTGCTCCGCCTCCGTGGTGG 9231 >seq342 Length=17698 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | |||| Sbjct 14286 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 14345 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || ||||| |||||||||||||| || || |||||||| | Sbjct 14346 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 14405 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 14406 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 14465 Query 27595 G 27595 | Sbjct 14466 G 14466 >seq118 Length=84147 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGC 32060 ||||||||||| || || |||||| |||||| ||| | ||| || || | |||||||| Sbjct 74803 CAGCGCAAGGTCATGTATGCCTGCTTCAAGAGAAACATCGTCAAG-GATAAGAAGGTGGT 74745 Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120 | || | || || || | || |||||| | || ||||| || || || || || || Sbjct 74744 TGAACTAGCTGGTTATGTTTCCGAACAAACGTCATACCACCATGGTGAAGCTTCTCTTCA 74685 Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180 | ||||| | | | || |||||||| ||||| |||| ||| | |||| ||||| Sbjct 74684 GCAAACCATCATTGGCTTGGCCCAGAACTTCGTCGGCTCAAACAACATCAACTGTCTCGA 74625 Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240 |||| ||| | || || | || || ||||| ||| ||||||||||| | ||||| Sbjct 74624 GCCAAGCGGAAACTTCGGCTCTCGACTTGCCGGCGGCTCAGATGCTGCGAGTCCTCGTTA 74565 Query 32241 CATCTTCACCCGTCT 32255 || || || || || Sbjct 74564 CACTTTTACTCGCCT 74550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305573748240