Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq24 329 4e-85
seq284 176 5e-39
seq388 138 1e-27
seq342 114 1e-20
seq118 111 2e-19
>seq24
Length=306188
Score = 329 bits (364), Expect = 4e-85
Identities = 1130/1741 (65%), Gaps = 43/1741 (2%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || || ||||||||||| |||||||| || ||||||||| | ||||||
Sbjct 134822 GTGCGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCTGCGAAGTGCATGCTG 134763
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | |||||||| | |||| |||||| || |||||||||||| ||||
Sbjct 134762 GTGATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTGAGGGACTGAGACTGATCGATG 134703
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCATACTGT 80216
|| || |||||||| || | ||||| | | || | || | | ||| ||||| || ||
Sbjct 134702 AAGGCACCACGATCGGCGGACATTTGGAGGACCTGGCGTTGG-GAAATCTCCCACACCGT 134644
Query 80217 ACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTT 80276
|| | | || || || ||||||| | | | | | ||||| ||
Sbjct 134643 CTTGTAGAGCGACTTAATGTCGTCCGGAATGTTAGGGATGTTCTGGATAGAACCGTTCTC 134584
Query 80277 TACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333
||| | || |||| || || ||| | || | | ||| || ||||
Sbjct 134583 AGAAATGATGCGGTTCTTCATGGCATCCGACCACAAGCCCATATCTACCAGGTCCTTCAA 134524
Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393
|| ||||| | ||||| || || ||| || ||| | || | ||| |
Sbjct 134523 GAGCCAGGGGTTAACAACCTGGAACTCACCAGCAAGGACACGGCGCTGGTAGATGTTCGA 134464
Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453
|| |||||||| || ||||| || || |||||||| | || || || || |||||
Sbjct 134463 GGTATAAGGCTCGAAGCATTCGTTATTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCAT 134404
Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGA 80513
||| ||| | || || || | ||||||| ||| | | |||||| || |
Sbjct 134403 AGGGGCGAGAAGCAAGCTGTTGCGAATACCGTGCTCCTTAACCTGCTCGCG-AAGGGTCT 134345
Query 80514 CCAAAAATCAAC---CCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568
|| | ||| | | ||| | || |||||| || ||| | ||| |||||
Sbjct 134344 CCCAGTCCCAAAGGTCGGAGGGCT-TCACGTTCCACATATCAAACTGGAGGATACCCTCA 134286
Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGA 80627
|| || || || ||| ||| | ||| || |||||| ||| || || | ||| |||
Sbjct 134285 GATGCTGGGGAACCCTTGAAGCTAGAGTAAGGACCCTCCTCCTTAGCGAGTTGCAC-CGA 134227
Query 80628 CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTG 80687
|| | | || ||||| |||||| |||||||| |||||||| | || ||||
Sbjct 134226 GGCCGTCAAAGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTCAACTCACGAGCCTC 134167
Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747
||| ||||| | || || | || ||| | ||||| || ||||| || ||||
Sbjct 134166 GGGGGACTCGAAGGGCATGCGAAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAC 134107
Query 80748 GGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTAT 80806
| || || ||||| ||| |||| | | || |||||| || ||||| |||
Sbjct 134106 ACCAATGGGTCGGTGACGCATGTTGCTGTTGCG-GGCCTCGATGATGGGGTAGTGGTTGA 134048
Query 80807 TATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAA 80866
||||| | ||||| |||||| |||||| |||| || || || || ||||| |
Sbjct 134047 CGTCGATAATCTTGTTCAAGTTGCGGACGACAACCTGTGTGACCTCGTGTAGCTTCTGGA 133988
Query 80867 AGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGC 80920
||||| | | | | || ||||| | || || || || || |||||||
Sbjct 133987 AGTCGTAGCAGCCCTCGTTGTAGTCAACAAAGGAAGGCAGAGCCAATGATGCGAGATTGC 133928
Query 80921 ACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAG 80977
| || || ||||| || |||| | ||| ||||| ||| || ||||| | || |||
Sbjct 133927 AAACAGCGACCTCATCGGGAGCA-CAGTA--CTCGATGATCTCAGTGCAAAGGTTGGAAC 133871
Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037
||| || |||||||| |||||||| || |||||| |||||||||| ||
Sbjct 133870 TGCGAATGGTGCCCAGGTTCTTCTGGTTGCTTTTACGGTTGCAGCTGTCCTTGTAGAGCA 133811
Query 81038 TGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097
|| | ||| | ||||| ||| ||| | || | |||||| | ||| | || | ||||
Sbjct 133810 TGAAAGGGTTGCCGGTTTCGGTCTGAGCCTCCAAGATGGCATACCACAGCTTCTGGGCCT 133751
Query 81098 TGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTG 81156
| | |||||| |||||| | | ||||||| |||| |||||| |||||||
Sbjct 133750 TCATGGTCTTGCGACCTTTGCCAGCCTGCTCATACTTCTCGTACAGCTTC-TCGAACTCA 133692
Query 81157 GCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTG 81216
|||||| |||| || | |||||||| || |||||||| || ||||||| |
Sbjct 133691 TCACCGTAGCAATCAGCAAGCCCGGGGCACTCATTGGGGCACATGAGAGTCCAGTCGCCG 133632
Query 81217 TCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276
| ||||| ||| ||||||||| || |||||||| ||||| ||||| ||| ||
Sbjct 133631 TTCTTCTCGACACGCTTCATGAACAGATCGGGGATCCACAGGGCCAAGAACAAGTCACGA 133572
Query 81277 CAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCA 81336
||| || || || | || ||||| ||||| || | || || | | ||| ||
Sbjct 133571 GCGCGGGCTTCTTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAATTCAAAAACGTCGGCG 133512
Query 81337 TGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACCCTGGTTG 81390
||||| ||||| || || | ||||| | || | | || ||| ||||||| |
Sbjct 133511 TGCCAGGGCTCAAGGTAAATGGCGAAAGCACC---GGGTCGCTTGTTGCCGCCCTGGTCG 133455
Query 81391 ACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCG 81450
||||| || ||||| ||| || ||||| | |||||| |||| ||||| || |||
Sbjct 133454 ACGTATCGAGCAGTGTTGTTGAAGACACGGAGCATAGGAATGACACCATTGGAGGTGCCG 133395
Query 81451 TTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGC 81508
|| ||||| | || || || |||| || | | ||| |||| |||||||||
Sbjct 133394 TTGGTACCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGCACGTTGA--GACCGATGC 133337
Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568
| |||| | ||| || ||| ||||| || | ||| || || || || |||||||
Sbjct 133336 CTCCTGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCGTCGATGC 133277
Query 81569 TATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCAT 81628
| |||| |||||||||| || ||| ||| |||| |||||| | || ||||
Sbjct 133276 TGTCTTCCTTCATGTCAACCAGGAAGCAGGAAGACAGCTGAGGCTGAGGGGTACCCGCAT 133217
Query 81629 TGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCT 81688
||||||| ||||| | |||||| |||| | | ||||| |||| ||||| |||
Sbjct 133216 TGAACAGGGTTGGTGAAGCGTGAGTGAACAGCTTGCTGGACATGAGGTTGTAGGTCTCCA 133157
Query 81689 TGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGG 81748
||| || || |||||||| || |||| ||| |||||||| | ||||| ||| |
Sbjct 133156 GGACACGCTCGATGTCGTCACCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGAG 133097
Query 81749 G 81749
|
Sbjct 133096 G 133096
>seq284
Length=28030
Score = 176 bits (194), Expect = 5e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || || || ||||| ||||| |||| ||| |
Sbjct 19254 GTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCGAC 19313
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| ||||| | || || |||||||||||||| || || || ||||| ||||| || ||
Sbjct 19314 AATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGATC 19373
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||| || ||||||| || ||||| | ||||| || |||||||||||
Sbjct 19374 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGGAA 19433
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||| || ||| | ||||||||||||||
Sbjct 19434 TCTACCCTTCACCTCGTCCTCCGTCTTCGCGGTGG 19468
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | ||||| |||||||| || |||||||| ||||||
Sbjct 19470 ATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCC 19529
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||| | || |||||||| |||||||| || || |||||||||
Sbjct 19530 GACACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 19589
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || || || ||||| || ||||||| |||||| | | ||||| ||
Sbjct 19590 CAGCGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCTTGTCCGACTACAAC 19649
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || |||||||| || || | || ||||| |||||
Sbjct 19650 ATCCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACTTCGTGGTGG 19696
Score = 172 bits (190), Expect = 6e-38
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || ||||||||||| |||||||| ||||| || || |
Sbjct 19698 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTCGAATCTTCT 19757
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | ||| | || ||||| ||||||||||| || || |||||||||
Sbjct 19758 GATACTATCGACAATGTCAAGTCGAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 19817
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||||||||||||||| || ||||||| ||| ||||| || || ||
Sbjct 19818 CAGCGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACCCTGAGTGATTACAAC 19877
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || || ||||| || || | ||||| || || || ||
Sbjct 19878 ATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGTCA 19927
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || ||||||||||| ||||| || | ||| | || | ||| |
Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 19041
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || ||||| || |||||||| || || || ||||| |||
Sbjct 19042 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 19101
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | || ||||| | ||||| || |||| ||||| ||||| || ||
Sbjct 19102 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 19161
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || || || ||
Sbjct 19162 CTCGTCCTCCGCCTCCGTGGAGG 19184
>seq388
Length=11445
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || ||||| || || |||||||| |||||
Sbjct 9457 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 9398
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||| | || || |||||||||||||||||||| || |||||
Sbjct 9397 GACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAA 9338
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || || || || ||||| || || |||| || ||||| ||| ||||| ||
Sbjct 9337 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGC-GACTACAA 9279
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||||||| || || | || || || |||||
Sbjct 9278 CATCCAGAAGGAGAGCACTCTTCACCTGGTGCTCCGCCTCCGTGGTGG 9231
>seq342
Length=17698
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || |||||||| ||||| || | ||||
Sbjct 14286 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATT 14345
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || ||||| |||||||||||||| || || |||||||| |
Sbjct 14346 GACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATTG 14405
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| || ||||||| || || || | ||||| || |||| |||
Sbjct 14406 ATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAAG 14465
Query 27595 G 27595
|
Sbjct 14466 G 14466
>seq118
Length=84147
Score = 111 bits (122), Expect = 2e-19
Identities = 179/255 (70%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTCGAGTGACATGAAGGTGGC 32060
||||||||||| || || |||||| |||||| ||| | ||| || || | ||||||||
Sbjct 74803 CAGCGCAAGGTCATGTATGCCTGCTTCAAGAGAAACATCGTCAAG-GATAAGAAGGTGGT 74745
Query 32061 GCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCA 32120
| || | || || || | || |||||| | || ||||| || || || || || ||
Sbjct 74744 TGAACTAGCTGGTTATGTTTCCGAACAAACGTCATACCACCATGGTGAAGCTTCTCTTCA 74685
Query 32121 GGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA 32180
| ||||| | | | || |||||||| ||||| |||| ||| | |||| |||||
Sbjct 74684 GCAAACCATCATTGGCTTGGCCCAGAACTTCGTCGGCTCAAACAACATCAACTGTCTCGA 74625
Query 32181 GCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTA 32240
|||| ||| | || || | || || ||||| ||| ||||||||||| | |||||
Sbjct 74624 GCCAAGCGGAAACTTCGGCTCTCGACTTGCCGGCGGCTCAGATGCTGCGAGTCCTCGTTA 74565
Query 32241 CATCTTCACCCGTCT 32255
|| || || || ||
Sbjct 74564 CACTTTTACTCGCCT 74550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570305573748240
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