Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq388 127 5e-24
seq284 125 2e-23
seq342 105 2e-17
>seq388
Length=11445
Score = 127 bits (140), Expect = 5e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || || |||||||| ||| || ||||||||||| ||| | ||||
Sbjct 9239 GAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCG 9298
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|||||||| || || |||||||||||||| | ||| ||||||| | ||||| ||
Sbjct 9299 GCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGGAATTCCCTC 9358
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | |||| ||| ||| || ||||| ||
Sbjct 9359 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGT 9418
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| || || |||||||| ||||| ||||||| |||||| || ||
Sbjct 9419 GATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTGCC 9463
>seq284
Length=28030
Score = 125 bits (138), Expect = 2e-23
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||| ||||| |||||||| ||||| || ||||||||||| |||| || || |
Sbjct 19687 AGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGG 19628
Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
||||| || || ||||| ||||||||||| || | ||||||||| | | ||| || |
Sbjct 19627 CCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCGCTGCTGGTCTGGGGGGATACCCT 19570
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || ||||| || |||||| | || | |||| || ||| || ||||| |
Sbjct 19569 CCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCACCTCAAGGG 19510
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || || | ||||| || |||| |||||
Sbjct 19509 TGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 19470
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || || ||||| || ||||| || || ||||||||||| | || |
Sbjct 19916 GAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACTCAGGGTGCG 19857
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || || || ||||| | ||||||||| | | ||| || ||
Sbjct 19856 ACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGGGATGCCCTC 19797
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| |||||||| || |||||| | || | | || ||| || || || |||||
Sbjct 19796 CTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGACCTCGAGAGT 19737
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || ||||| ||||| ||||| ||||| | ||||||
Sbjct 19736 AATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698
Score = 100 bits (110), Expect = 7e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || ||||| ||||| || |||||||||||||| |||| | |||| |||||
Sbjct 19454 GAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTTCGGCCATC 19395
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | ||| ||||| | | ||| || ||||| ||
Sbjct 19394 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGGGATACCCTCCTTGTC 19335
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | | | || ||| ||| || || || || || ||
Sbjct 19334 CTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGACCTCGAGGGTGATGGT 19275
Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094
||||| ||||| ||||| ||||
Sbjct 19274 CTTGCCAGTGAGGGTCTTGACGA 19252
Score = 89.7 bits (98), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || || || ||||| || ||||||||||| |||| | || |
Sbjct 19176 GAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 19117
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| || ||||||||||| | |||||| |||| | ||| ||
Sbjct 19116 GCCGTCCTCGAGCTGCTTT--CCAGCGAAGATAAGGCGCTGCTGATCCGGAGGGATGCCC 19059
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || || || | || | | |||| || ||| || ||||||
Sbjct 19058 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGA 18999
Query 152064 GTAATAGTTTTGCCCGT 152080
|| || || || |||||
Sbjct 18998 GTGATGGTCTTTCCCGT 18982
>seq342
Length=17698
Score = 105 bits (116), Expect = 2e-17
Identities = 133/181 (73%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974
|| ||||||||||| |||| | ||| | ||||| || || ||||| ||||||||||
Sbjct 14464 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTT--CCGGCGAAGA 14407
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | |||||| |||| | ||||| ||||| || || || || |||||| | |
Sbjct 14406 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 14347
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | |||| || ||| || ||||| || || || ||||||||||| ||||||||||
Sbjct 14346 CAATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 14287
Query 152095 A 152095
|
Sbjct 14286 A 14286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153810791686267
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |