Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq388 183 6e-41 seq284 154 3e-32 seq342 134 3e-26 seq112 113 9e-20 seq663 96.9 7e-15 seq464 84.2 5e-11 >seq388 Length=11445 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||||| || || |||||||||||||| Sbjct 9230 ACCACCACGGAGGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 9289 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || ||||| ||||| | || |||||||| || Sbjct 9290 CAGGGTTCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCCGGGGG 9349 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||||||||| |||| || || Sbjct 9350 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 9409 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 9410 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTT 9460 >seq284 Length=28030 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || ||| ||||||||||||||||| | Sbjct 19469 ACCACCGCGAAGACGGAGGACGAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 19410 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || |||||||||| || |||||||| || Sbjct 19409 GAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGGGG 19350 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| || ||||||| ||||| Sbjct 19349 GATACCCTCCTTGTCCTGGATCTTCGACTTCACATTGTCGATGGTATCCGAAGACTCGAC 19290 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || || | ||||| |||| Sbjct 19289 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 19252 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || ||||| || | || || || || |||||||| ||| Sbjct 19925 ACCGCCACGGAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCACT 19866 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || ||||| || | || || ||||| || Sbjct 19865 CAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGTCGCTGCTGGTCTGGGGG 19806 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| ||||| | || || | |||||||| || |||| |||||| Sbjct 19805 GATGCCCTCCTTGTCTTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGATTCGAC 19746 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| || || | ||||| ||||| |||||||| Sbjct 19745 CTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 19698 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 19185 ACCTCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 19126 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||| | || || || || || Sbjct 19125 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGATCCGGAGG 19066 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 19065 GATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCCGAGGACTCGAC 19006 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || |||||||| ||||| ||||||| Sbjct 19005 CTCAAGAGTGATGGTCTTTCCCGTCA 18980 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 19697 ACCACCACGAAGTCGGAGAACAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 19638 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| || || || ||||| ||||| | || || ||||| | Sbjct 19637 CAAG-GTACGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCTGGGG 19579 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | ||||||||||| || || ||||| | || || | ||||| ||||| || | || | Sbjct 19578 GGATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATCGTGTCGGATGACTCCA 19519 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 19518 CCTCAAGGGTGATAGTCTTACCGGTCAAGGTCTTGACAAAGATTTGCAT 19470 >seq342 Length=17698 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 14464 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATC 14405 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || ||||| |||||||| || |||||||| | || || | || Sbjct 14404 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCA 14345 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 14344 ATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 14286 >seq112 Length=604763 Score = 113 bits (124), Expect = 9e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | ||| || | |||||| |||| | |||||||| | || |||||| Sbjct 339750 AGGAGTTCCTGACCGAGGCACTGCCTTGCGCTCTTCTGGGCATGAACTCGGACCTCATGA 339809 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 |||||| ||||| || || || || ||| || | ||||| || || ||||||| | | Sbjct 339810 AGCAATACATCGAGTTTGTTGCCGACCGTCTTCTTGTGGCACTTGGCAACGAGAAGATTT 339869 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || || |||||||||| || |||||| ||| || || || || || |||| Sbjct 339870 ACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 339929 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||||| |||||||| | ||||| || ||||| Sbjct 339930 TCTTCGAGAAGCGTGTTGGTGATTACCAGAAGGC 339963 >seq663 Length=163754 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726 || ||||| |||| ||||| || |||| | | |||||||||| || || || | Sbjct 13920 ACACCACCCTCGAACTTCTTGAGGGCCTTGGAAAGGGCACCGAGAGAGTCACGATCGAGG 13979 Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGAT 315785 ||||||| ||||| ||||||||||||| |||||| | ||||| ||||| |||| | | Sbjct 13980 TAGTTGGTGGGCTCGTCAAGAACGATGAGATGGGGTCGCTGCCA-AGAGCAGGCGGCAAG 14038 Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835 || ||| | || ||||||||||| ||||| |||||||| |||| Sbjct 14039 GACAGTCTTGACACGCTGGCCACCAGACAGACCACGCATGCGAGAGTGAG 14088 >seq464 Length=5549 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 109939 GCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTGT-GAA 109997 |||||| | |||| ||||||| | |||||||||| | || | |||| | || | ||| Sbjct 3389 GCAACACCCTCAACTTGCGGGGAACCCCTAAAGCTTCTGCT-CCAAAGCCGACGTTCGAA 3331 Query 109998 AGCATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAAATTCATATGATGCCACAA 110055 ||| | ||||| | || || |||||||| | ||||| || | |||| ||||| Sbjct 3330 AGCCGTCGGTGGCCAGGTTAATAGC-CTCGGGTACTGGAAAAACGCAGAAGATGTCACAA 3272 Query 110056 TGGGCAATCCGCAGCCAAGCCTCTAA 110081 ||||||||||||||||||||| |||| Sbjct 3271 TGGGCAATCCGCAGCCAAGCCCCTAA 3246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730120518758