Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05]
677 sequences; 45,719,213 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq388 150 4e-31
seq284 149 2e-30
seq342 140 8e-28
>seq388
Length=11445
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 9454 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 9395
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || ||||| || |||||||| ||
Sbjct 9394 ACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAG 9335
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || ||||| |||||||| | || || ||| || ||| ||
Sbjct 9334 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAACATC 9275
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 9274 CAGAAGGA 9267
>seq284
Length=28030
Score = 149 bits (164), Expect = 2e-30
Identities = 164/216 (76%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || | || || || || |||||||| |||||||| || |||
Sbjct 19473 CAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCCGAC 19532
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||||||||| || || || ||||| || ||||||||
Sbjct 19533 ACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAG 19592
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||||| |||||||||||||| ||||| || ||||| | || |||| |||| || ||| |
Sbjct 19593 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 19651
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||| || || ||||| || || |||||| | ||||
Sbjct 19652 CCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACT 19687
Score = 136 bits (150), Expect = 1e-26
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || ||||| || ||||| || ||| ||||||||||| ||||| ||
Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 19041
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || ||||||||||| ||||| || ||||||||||| |||||
Sbjct 19042 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 19101
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | || || |||| || ||| |||| || || || || || ||
Sbjct 19102 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 19161
Query 178125 CTTGT 178129
|| ||
Sbjct 19162 CTCGT 19166
Score = 125 bits (138), Expect = 2e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || |||||||||||||| || || || |||||||
Sbjct 19252 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 19311
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || ||||| |||||||| || || ||||| || ||||| || || || |
Sbjct 19312 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 19371
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || ||||| | || || |||| || ||| ||||||| |
Sbjct 19372 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 19431
Query 178111 AATCAACACTGCATCTTGT 178129
|||| || || || || ||
Sbjct 19432 AATCTACCCTTCACCTCGT 19450
>seq342
Length=17698
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || ||||| || || || |||||||| ||||| || ||| ||||||||
Sbjct 14285 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 14344
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
|| || ||||| ||||| ||||| || || ||||| || ||||| ||||| ||| |
Sbjct 14345 TGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATT 14404
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 14405 GATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 14464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203720758760338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |