Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001306435.1_202015-10-05] 677 sequences; 45,719,213 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq388 150 4e-31 seq284 149 2e-30 seq342 140 8e-28 >seq388 Length=11445 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 9454 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 9395 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || ||||| || |||||||| || Sbjct 9394 ACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAG 9335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || ||||| |||||||| | || || ||| || ||| || Sbjct 9334 CGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGCCGAACCCTGAGCGACTACAACATC 9275 Query 178104 CAAAAAGA 178111 || || || Sbjct 9274 CAGAAGGA 9267 >seq284 Length=28030 Score = 149 bits (164), Expect = 2e-30 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || |||||||| |||||||| || ||| Sbjct 19473 CAAATCTTTGTCAAGACCTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCATCCGAC 19532 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||| || || || ||||| || |||||||| Sbjct 19533 ACGATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAG 19592 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| |||||||||||||| ||||| || ||||| | || |||| |||| || ||| | Sbjct 19593 CGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 19651 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| || || |||||| | |||| Sbjct 19652 CCAGAAGGAGTCAACTCTTCACCTTGTTCTCCGACT 19687 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| || ||||| || ||| ||||||||||| ||||| || Sbjct 18982 ACGGGAAAGACCATCACTCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTTAAGTCG 19041 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||||||||| ||||| || ||||||||||| ||||| Sbjct 19042 AAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTTATCTTCGCTGGAAAG 19101 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || |||| || ||| |||| || || || || || || Sbjct 19102 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 19161 Query 178125 CTTGT 178129 || || Sbjct 19162 CTCGT 19166 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||||||||| || || || ||||||| Sbjct 19252 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGATACCATCG 19311 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || ||||| |||||||| || || ||||| || ||||| || || || | Sbjct 19312 ACAATGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAACAGCGCCTGA 19371 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || ||||| | || || |||| || ||| ||||||| | Sbjct 19372 TCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAAAAGG 19431 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || || || || Sbjct 19432 AATCTACCCTTCACCTCGT 19450 >seq342 Length=17698 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || ||||| || || || |||||||| ||||| || ||| |||||||| Sbjct 14285 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCAT 14344 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||| ||||| || || ||||| || ||||| ||||| ||| | Sbjct 14345 TGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGATT 14404 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||||||||| ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 14405 GATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 14464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203720758760338