Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq46 159 7e-34 seq175 96.9 7e-15 >seq46 Length=277877 Score = 159 bits (176), Expect = 7e-34 Identities = 320/469 (68%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| ||||||||||||||| | || || ||||| | || ||| |||| Sbjct 256315 TTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTC 256256 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| ||||| ||| ||| | ||||||||||| | || |||||| Sbjct 256255 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACGAG 256196 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 ||||| || || ||||||||||| || | | || | | ||| | | || | || Sbjct 256195 CTCATCTCCCGTGATGAGGGTCTCCA-CACCGACTTTGCCTGCCTTCTCTTCTCTCACCT 256137 Query 230352 CCAGAACAAGCT-ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACG 230410 | | ||| | | || | || | || | |||||||| || || || || | Sbjct 256136 CAACAACCGCCCCAGCAAGC-AGCTGATCCAGGAAATCATTGTCGATGCCGTCAGAATTG 256078 Query 230411 AAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTA 230470 | |||||||| | ||| || | || || |||| ||||||||||||| || || | Sbjct 256077 AGCAGGAGTTCCTCACTGAGGCCCTCCCTTGCGCCCTTCTTGGCATGAACGCCGACCTCA 256018 Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530 || ||||||||||| ||||| ||||| || | |||| || || || ||||||| Sbjct 256017 TGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTCCTTGTCGCCCTCGGCAACGAGAAGA 255958 Query 230531 TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCA 230590 | |||| || | |||||||| | || |||||| |||||| || || ||||||| Sbjct 255957 TCTACAGGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCA 255898 Query 230591 ACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||||||| |||||||| | ||||| |||| | ||||||| ||||| Sbjct 255897 ACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAAGGCTGGTGTCATGAA 255849 >seq175 Length=71793 Score = 96.9 bits (106), Expect = 7e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 319402 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 319461 || ||||| ||| || || |||||||| | ||||| ||| || ||||| ||| Sbjct 10845 TTGACGAAGGCGGCGAGGTTGCCCTTGTAGTGGCCAAGCTTCTTGTTGGGCTCGTAGTGG 10786 Query 319462 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 319521 || |||| ||| ||||||||| ||||||||||| |||||||||| | | | Sbjct 10785 TAGATGTCGGTGGTGACATTGTCGAGGAAACCGGAGTCGTGAGACACAATCAGGGAGGTG 10726 Query 319522 ACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGG 319581 | ||| | || | ||||| || | |||| | | ||| | ||| ||||||| Sbjct 10725 ATGTCGGTGTGGGACTTGAGGTACTCCTCGAGCCACTTGATGTTGGCAACATCAAGATGG 10666 Query 319582 TTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 319641 || || || ||||| || | ||| | | || ||| | ||||| ||||| || | ||| Sbjct 10665 TTAGTAGGTTCGTCGAGCAACAGGACATCGGCCTTCTGAAGCATGGCACGCGCCAAGGCG 10606 Query 319642 AGTTTCATTTTCCACCCTCCGGAAAG 319667 || ||||| ||||| || ||||| || Sbjct 10605 AGCTTCATCTTCCAACCACCGGAGAG 10580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819147893540