Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq86 174 2e-38 >seq86 Length=170212 Score = 174 bits (192), Expect = 2e-38 Identities = 493/756 (65%), Gaps = 6/756 (1%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| || || || |||||||| ||||||| | | | | || | || ||||||||||| Sbjct 127134 AGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCA 127075 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | |||||| || | || | || |||||||| ||| || ||||| Sbjct 127074 CAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATC 127015 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | || || ||| |||||| || | || || | ||| | Sbjct 127014 CTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAG 126955 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTGTATACAA 53946 | ||||| | | ||| | ||| ||| ||||||| | |||| Sbjct 126954 CTTCTGGGCCTTGACGGTC---TTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACAG 126898 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 ||| |||||||| || |||| | | | | ||||| || || | || ||||| | Sbjct 126897 AGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAG 126838 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||||| |||| | || || || ||||| || ||||| || ||||| || || | Sbjct 126837 AGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAG 126778 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || ||||| | | | || || || || ||||| || || |||||| | Sbjct 126777 GAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTC 126718 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | ||| | ||||| || || | ||| |||| | | | ||||| || ||||| || Sbjct 126717 GAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCC 126658 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| || Sbjct 126657 ACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTT 126598 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 ||||| || ||||| || | ||| ||| ||| |||||||||| || || Sbjct 126597 GGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAG 126538 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || || || ||||| |||||||| | ||||| || | ||||| |||||||| Sbjct 126537 ACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCC 126478 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||| ||||| || ||| |||||| | || || || ||| | ||| | | ||| Sbjct 126477 CTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGT 126418 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || || || || | ||| ||||||||||| || || Sbjct 126417 ACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAA 126382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718943095840