Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 >seq18 Length=383124 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| ||||| || || || |||| || ||||| ||||| Sbjct 57423 GTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCAAGCTGCTTGCCG 57364 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| || | |||||| || || | ||| |||||||| ||||||||| || Sbjct 57363 GCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTTTGCTTG 57304 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || | ||| || | ||| |||||||||||||| | || Sbjct 57303 ACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTC 57244 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 57243 TTGACGAAGATTTGCAT 57227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | || |||||||| || ||||| ||||| | Sbjct 57225 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 57166 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||| ||| ||||| ||| |||| | | ||||||||| ||| Sbjct 57165 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGA 57106 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||||| || || | | | | ||||| | ||| Sbjct 57105 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACC 57046 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||||||||| Sbjct 57045 TCGAGGGTGATGGTCTTGCCGGT 57023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| ||| |||||| |||||||| ||||| | Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| || || || |||| || | |||||| || || Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||||||| || || | | ||| || || | ||| Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACC 57502 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||||||||| | ||| || || || || ||||| Sbjct 57501 TCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257357630328