Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq46 315 7e-81 seq81 150 2e-31 seq18 138 1e-27 seq43 127 2e-24 >seq46 Length=277877 Score = 315 bits (348), Expect = 7e-81 Identities = 550/792 (69%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || Sbjct 256711 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 256652 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | ||||||||| ||||| |||||| Sbjct 256651 TCCAAGGACCTTCACGACTGGAACAACAGGTTGAACGACGACGAGAAGTTCTTCATCTCC 256592 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || ||||| ||| ||| || || ||||| ||||| || |||||||| Sbjct 256591 CACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGAGCGC 256532 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||| | ||||||| || ||||||||||| || |||||| ||| Sbjct 256531 TTCAGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 256472 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || |||||||||||| ||| | | || || | Sbjct 256471 GAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACTTACATCAAGGAGCCCTCC 256412 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||| | || | | || ||||| || || || || || ||| || | ||||| Sbjct 256411 --CAGAGGACCTAC--CTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAAGGC 256356 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGG 117047 || ||||| || |||||||| ||| || |||| || |||| | | |||| || || | Sbjct 256355 TGACTGGGCTCTTCGCTGGATTACCGACA-AGAGCTCCACCTTTGCCCAGCGTCTCGTCG 256297 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || ||||||||||| ||||||| || ||||||| |||| || ||||||| Sbjct 256296 CCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCA 256237 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||| |||||||| ||||| || || |||||||||||||||| | || |||| Sbjct 256236 AGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGATGAGG 256177 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || |||||||||||| | || ||| || | | || || ||| | Sbjct 256176 GTCTCCACACCGACTTTGCCTGCCTTCTCTTCTCTCACCTCAACAACCGCCCCAGCAAGC 256117 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 || || ||| ||| | ||| || ||| || |||||| |||||||| || | Sbjct 256116 AGCTGATCCAGGAAATCATTGTCGATGCCGTCAGAATTGAGCAGGAGTTCCTCACTGAGG 256057 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || |||| || || || | || ||| ||| ||| |||||||||||| Sbjct 256056 CCCT-CCCTTGCGCCCTTCTTGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTC 255998 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 |||||||| | || || ||| || | | || ||| ||||| || | ||||| Sbjct 255997 GTCGCCGATCGTCTCCTTGTCGCCCTCGGCAACGAGAAGATCTACAGGTCGACTAACCCC 255938 Query 117407 CTGGACTTTATG 117418 | ||||| ||| Sbjct 255937 TTCGACTTCATG 255926 >seq81 Length=180685 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 25341 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 25282 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| | || || | ||||| |||||||||||| | |||||| Sbjct 25281 GACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 25222 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 25221 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 25162 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| ||| || || || ||| | ||| Sbjct 25161 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTTCGC 25126 >seq18 Length=383124 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| ||||||||| | || || ||| | || Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||| || | ||||| |||||||| || | || || Sbjct 57287 GACACTATCGACAACG-TCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCA 57345 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| ||||| || |||| ||||| | | ||||||||| Sbjct 57346 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAA 57405 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || ||||| || Sbjct 57406 CATTCAGAAGGAGTCTACCCTTCATCTCGT 57435 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || || |||| || || | || Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| |||| || | ||||| ||||| ||||| | || || Sbjct 57515 GACACCATCGACAACG-TAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCA 57573 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 57574 GCAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAA 57633 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 57634 CATTCAGAAGGAGAGCACCCTGCA 57657 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| ||||| | | || | | | | | ||||| || Sbjct 57023 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGATACCATTGACAATGTCAAGCAA 57082 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| ||| | |||||||| || | || | || ||||| Sbjct 57083 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGCAAG 57142 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||| |||| || | |||||||| |||||||||||||||||||||| | || || || Sbjct 57143 CAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 57202 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 || || | ||| || | || || Sbjct 57203 CTTGTCCTCCGCCTGCGCGGTGG 57225 >seq43 Length=285406 Score = 127 bits (140), Expect = 2e-24 Identities = 139/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| || || ||||||||||| |||||||| |||| || || || |||||| | | Sbjct 263554 TTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCCGACACGATT 263495 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | || | ||||| | || |||| ||||| ||||| ||||| | |||||||| || || Sbjct 263494 GACAATG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAGCGCCT 263436 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || | || ||||| ||||| || || | ||||||||| |||||||||||||||||| Sbjct 263435 GATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 263376 Query 40878 GG 40879 || Sbjct 263375 GG 263374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216894394080