Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18 136 3e-27 seq81 134 9e-27 seq43 113 3e-20 >seq18 Length=383124 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | ||| || ||||| |||||||||||||| Sbjct 57225 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 57166 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| || ||||| | |||||||||||| ||| Sbjct 57165 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGA 57106 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | || | | || | ||| | ||| ||||| Sbjct 57105 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACC 57046 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 57045 TCGAGGGTGATGGTCTTGCCGGT 57023 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| || ||||| |||||||||||| | Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | ||||||||| ||||||||||| |||||||| ||| || Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||||||||| | | | | || | |||| |||||| || Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| ||||| || || ||||| ||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | |||||||| ||| | ||| || || ||||| |||||||| || || Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || ||||||||||| || || || || || ||||||||||| | |||| Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||||||||| | | | |||| ||| | || ||||| Sbjct 57789 -ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGAC 57731 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||| || | || || || || |||||||| Sbjct 57730 TTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || ||||| |||||||||||||| || || | || Sbjct 57666 AGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCC 57607 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||||||||| |||||||| || || | | ||||||||| Sbjct 57606 TCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 57547 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||||| | | | || | |||| || || || || | || || || Sbjct 57546 TGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTC 57487 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || || |||||||| Sbjct 57486 TTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 >seq81 Length=180685 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || || ||||| |||||||||||||| || ||| | || Sbjct 25130 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 25189 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||||||||| ||| | || ||||||||| Sbjct 25190 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 25249 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | || | | || | ||| | || || || || | ||||| || Sbjct 25250 TGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 25309 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||| ||||||||||| Sbjct 25310 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 >seq43 Length=285406 Score = 113 bits (124), Expect = 3e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| | || || | ||||||||| || ||||| Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||||||| || | | ||||||||| ||||| ||||| | || | | Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| |||| || || || || | ||||||||| ||||| ||||| || || || ||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 263555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070590396480