Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq86 125 2e-23 >seq86 Length=170212 Score = 125 bits (138), Expect = 2e-23 Identities = 606/951 (64%), Gaps = 26/951 (3%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||| | ||||| || || || | Sbjct 126190 GCAATTGTCTACGACCGTGACTTCAACTACCAATACTTCGGCTTCAAGACCCTCGAACGA 126249 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || || || | |||||| |||| | || || ||||||||| | ||||| Sbjct 126250 TCATACCTTCTTAAGCTCGATGGCCAGATTGCTGAGCGTCCCCAGCACATGATCATGCGT 126309 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 || |||||||| || || ||| | ||| | || | ||||| |||| | ||| Sbjct 126310 GTTGCTGTCGGTATCTGGGGAGACGACGTTGAGCGGGTCATTGAGACTTACAACCTCATG 126369 Query 248971 AG--TGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACA 249028 | || | | || || || | || || ||||||||||||||||| | | Sbjct 126370 TCCCTCAAGACCT--TCACCCACGCTTCTCCCACCCTCTTCAACGCCGGTACTCCCCAGC 126427 Query 249029 ATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATG 249088 ||||| |||||||| || | | |||| | || ||| | |||| ||||| || | Sbjct 126428 CCCAGCTCTCTTCGTGCTTCCTGGTCGACATGAAGGAAGACAGTATCGAGGGCATCTACG 126487 Query 249089 ACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTC 249147 | || || || || || | | ||| ||||| | || ||||| ||||||||| | || Sbjct 126488 ATACCCTCAAGACCTGCGCC-ATGATCTCTAAGATGGCTGGCGGTATCGGTCTCAACATC 126546 Query 249148 TCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATC 249207 | ||| || || | || || |||||| ||||| || || | |||||| Sbjct 126547 CACCGCATTCGTGCCACTGGCTCCTACATCGCTGGTACCAACGGCACATCCAACGGTATC 126606 Query 249208 GTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC--- 249264 || ||| | || || ||| | ||||||| | | | | |||||| || | Sbjct 126607 GTTCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAGGGTGGCAACAAG 126666 Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || || | |||||||| || | || |||||||||||| | || |||||||| Sbjct 126667 CGTCCTGGTGCTTTCGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTCGAGTTCCTT 126726 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| | |||||| |||| || || || | || || || |||||| | ||| Sbjct 126727 GACCTCCGCAAGAACCACGGTAAGGAAGAGGTGCGCGCTCGCGATCTCTTCCTTGCCCTC 126786 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| || |||| | |||||| || || || ||||| | ||||| || | | Sbjct 126787 TGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCAGAACGGCCAGTGGACTCTCATGTGC 126846 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAA 249503 || ||| ||| | ||| ||| | |||| | ||| ||||| ||| || || Sbjct 126847 CCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGGTGACGAGTTCGA---AGCTCTGTAC 126903 Query 249504 GAAA--TACGAATCCAACGGCATCGG---CAAGACAATCAAGGCTCGGACCCTTTT---T 249555 |||| |||||| | |||| || |||||| ||||||| | || |||| | Sbjct 126904 GAAAAGTACGAAAAGGAAGGCAAGGGTCGCAAGACCGTCAAGGCCCAGAAGCTTTGGTAT 126963 Query 249556 GCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATT-TGTTCAAAGACGC 249614 || | | | ||| |||||| ||||| || || | | || | | ||| || || Sbjct 126964 GCCA---TCCTCGAGGCCCAGACTGAGACGGGCAACCCCT-TCATGCTCTACAAGGATGC 127019 Query 249615 GTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC 249674 |||||| |||||||||||| | | || |||||||||||| || || || || | Sbjct 127020 CTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACCATCCGCAGCTCCAACCTGTGCAC 127079 Query 249675 AGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| | || | ||||| | ||| ||| ||||||| |||||||| || Sbjct 127080 TGAGATTATCGAGTACTCTGCTCCGGATGAGGTTGCCGTTTGCAACCTTGC 127130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761474767744