Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq81 140 3e-28 seq18 138 9e-28 seq43 86.0 5e-12 >seq81 Length=180685 Score = 140 bits (154), Expect = 3e-28 Identities = 159/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| || ||| | || || || || Sbjct 25138 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTG 25197 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| ||||| ||||| || || | |||||||||||| || || Sbjct 25198 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 25257 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| || | | | |||| | | ||||||||| | ||| || ||||||||||| Sbjct 25258 CTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 25317 Query 45313 CAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || |||||||| ||||| |||||| |||||| Sbjct 25318 GAGGGTCTTCACGAAGATCTGCATGATTGCCT 25349 >seq18 Length=383124 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||||||||||||||||||||||||||| || |||| | || || Sbjct 57663 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 57604 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| || || || || | ||||||||||||| Sbjct 57603 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGG 57544 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | | |||| | ||| ||||| | |||||||||||| Sbjct 57543 ATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTG 57484 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || || ||||| Sbjct 57483 CCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| ||| ||| |||| || || || || |||||||| Sbjct 57418 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 57359 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || |||||||| | ||||||||||| || |||||||| || Sbjct 57358 AATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTT 57299 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| |||||||| | ||| || |||||||| || |||||||| || Sbjct 57298 GTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGAC 57239 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 57238 GAAGATTTGCAT 57227 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||||||||||||||||||||||| || || || | || ||| Sbjct 57891 ACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCCTCC 57832 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || |||| ||||| ||||| || || | ||||||||||||| Sbjct 57831 AACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGG 57772 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | | ||| | ||| || |||| |||||||||||| Sbjct 57771 ATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTCTTG 57712 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| || || || ||||| Sbjct 57711 CCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| | || |||| || || ||||| || Sbjct 57190 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 57131 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| |||||||| || | |||||||||||| ||| |||||||| || Sbjct 57130 AATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATT 57071 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314 | | | | ||| ||| ||||| | ||| || |||||||| |||| Sbjct 57070 GTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 >seq43 Length=285406 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| || ||| | || || || || || || || || | Sbjct 263374 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAA 263433 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||| |||||||| || | ||||||||||||| ||| || ||||| || Sbjct 263434 TCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGT 263493 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||| ||| ||||| | || || ||||||||||| || ||||| || | Sbjct 263494 CAATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 263553 Query 45327 AG 45328 || Sbjct 263554 AG 263555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073476237518