Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq86 372 3e-98 seq18 156 4e-33 seq46 154 1e-32 seq43 96.9 3e-15 seq81 95.1 1e-14 >seq86 Length=170212 Score = 372 bits (412), Expect = 3e-98 Identities = 1221/1882 (65%), Gaps = 26/1882 (1%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| | || || | | || || || || |||||||| Sbjct 128055 CTGGTCTACAGTGAACTGGATGGGCTGAGCAGCAGCCTGCGTACGGAGGTAGTACATGCC 127996 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAACTC 22222 ||||| |||||||||||||| || ||||| || || ||| || |||| | Sbjct 127995 GGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGT-AATCTTGCCCATGG-TG 127938 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||||| | |||| ||||| |||||| || || || || |||||||| Sbjct 127937 GGTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCACGATCGGCA 127878 Query 22283 GCCATATTTATCAATG-TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341 ||||| || | ||||| ||||| || || ||||| |||||||| || || | |||| Sbjct 127877 GCCATCTTGA-CAATGGTACGCTGAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGAT 127819 Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || || || || ||| |||||| || ||| | ||||| || || Sbjct 127818 GTCATTGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | ||| ||| | || || | | ||| ||| || |||| || || Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGAC 127699 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||||| | || || |||||||| ||||| || ||| | || ||||| | Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| || || ||||||| || ||||| || ||||| || || | ||| || Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 ||| | | |||| ||| || | |||||| | ||||||||| || | || Sbjct 127578 GTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGAGCAGTCCAGTCCCAGAGGTTGGT 127519 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCT-GCC 22698 || || || || |||||| |||||||| | | || | || | ||||| ||| Sbjct 127518 AGGGGTGACGTT---CCACATGTCGTATTGGAGGATTCCCTGGGA---GACGGGCGAGCC 127465 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 |||||| || ||||||| || | | ||| || | ||| || | ||| | Sbjct 127464 TTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGC 127405 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 || || || |||||||| || | |||| | | | || ||| | ||| | || Sbjct 127404 GTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAGAATCGAAGGG 127345 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 ||| || | || ||| || || || | ||||||||| || | ||| || || |||| Sbjct 127344 CATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAATGGGACGGTG 127285 Query 22879 TTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 || || | || || |||| | || || || || || | || Sbjct 127284 ACGCATGTTG--CTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAATGATCTTG 127227 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA-ACGCC 22995 || | ||| | | || | || || | | ||||||||| | || Sbjct 127226 TTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAAGAGGCA 127167 Query 22996 CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053 | ||| | | ||| | | ||||| |||||||| ||||| ||||| ||||| Sbjct 127166 TTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCA 127107 Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113 || | | |||||| | ||| || || || || ||| | || || |||| Sbjct 127106 TCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGG 127047 Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173 || ||||||| || || || ||||| | |||||||||||||||| | || |||||||| Sbjct 127046 TTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTC 126987 Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC 23233 || ||| | ||||| ||| || ||| | |||| || | || ||| || | Sbjct 126986 TCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGACG-GTCTTGCGACC 126928 Query 23234 CT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGC 23292 || |||||| | |||||||||| ||||| || || || ||| |||||||| |||||| Sbjct 126927 CTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGC 126868 Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 ||||| || | | || ||||||||| ||||| || | ||||| || | Sbjct 126867 AAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTT 126808 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| |||||||| || ||||| || || ||| || ||||| ||||||||||| || || Sbjct 126807 CATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTT 126748 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| |||||| | || | || || || || || || ||||| ||||||||||| Sbjct 126747 ACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTA 126688 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||| || || || || | ||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 126687 GATGGCGAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTT 126628 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | | || | ||||| || |||| ||||||||| | |||| || || | || Sbjct 126627 GAAGACACGGAGCATGGGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGA 126568 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 || | || |||| | ||| | || || ||| || || || || || || ||||| Sbjct 126567 GCCAGTGGCACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCAT 126508 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 ||||| || || || ||||||||||||||||| ||||| || || | |||||| Sbjct 126507 GGCGCAGGTCTTGAGGGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAG 126448 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||| |||||||| | || | | ||| ||| |||| ||| || || || ||||| Sbjct 126447 GAAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTG 126388 Query 23773 CGT-AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 || || || | | ||||| || ||||| || || ||| | |||| ||| |||| Sbjct 126387 GGTGAAGGTCTTGA-GGGACATGAGGTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTC 126329 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 | ||||||| || || ||||| ||||||| || || | ||| | | ||| | Sbjct 126328 CCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCAATCTGGCCAT 126269 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | || | || ||||| |||| | || || || || || || | ||||| |||| Sbjct 126268 CGAGCTTAAGAAGGTATGATCGTTCGAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGT 126209 Query 23952 CACGATCGTGCACTATGGCCGA 23973 |||| |||| || || ||||| Sbjct 126208 CACGGTCGTAGACAATTGCCGA 126187 >seq18 Length=383124 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || ||||| || |||||| | || || ||| ||||| Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| || | || |||||||| ||| | || ||||| ||| Sbjct 57287 GACACTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAG 57346 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | |||||| ||| ||||||| || ||| Sbjct 57347 CAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAAC 57406 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || |||||||| || ||| | || | || |||| Sbjct 57407 ATTCAGAAGGAGTCTACCCTTCATCTCGTTCTTCGTCTACGCGGTGGTA 57455 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| || |||| ||||| | ||| Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || | || ||||||||| || | || || || ||| Sbjct 57515 GACACCATCGACAACGTAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 57574 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || |||||||| || ||| | || || Sbjct 57575 CAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGA 57609 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| ||||| || | || || || | || Sbjct 57683 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCG 57742 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || | || ||||||||| || | ||||| |||||| Sbjct 57743 GATACGATTGATAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 57802 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || |||||||| || ||| | ||||| ||| Sbjct 57803 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACAAC 57862 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || |||||||| |||| || Sbjct 57863 ATTCAGAAGGAGAGCACTCTTCACTTGGTGCT 57894 >seq46 Length=277877 Score = 154 bits (170), Expect = 1e-32 Identities = 493/753 (65%), Gaps = 30/753 (4%) Strand=Plus/Minus Query 57555 ATTGAATATCCAGAC-----ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGA 57609 |||| ||||||| || || ||| | |||||||| ||||| || || || || |||| Sbjct 256731 ATTGGATATCCACACTACAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGA 256672 Query 57610 CCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAAT 57666 ||| ||| || | || || || ||||| || ||| ||| | | | || || Sbjct 256671 CCGCCGAGGAGATTGATCTCTCCAAGGACCTTCACGACTGGAACAACAGGTTGAACGA-- 256614 Query 57667 CTGAGAGAAATTTT--ATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGT 57724 | ||||| || | || ||| | | || || ||||| || |||||||||||||| Sbjct 256613 CGACGAGAAGTTCTTCATCTCCCACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGT 256554 Query 57725 TAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTT 57784 || ||||| | ||||| | || ||||| || | | ||||| | ||||| Sbjct 256553 CAATGAGAACCTCGTCGAGCGCTTCAGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTT 256494 Query 57785 TTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGA 57844 ||||| || || | || || ||| | || || || | || || || |||||||| Sbjct 256493 CTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGA 256434 Query 57845 TACGTACGTGAAGGACAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGC 57903 || ||| | ||||| | | ||| || || || |||||||| || || || || | Sbjct 256433 CACTTACATCAAGGAGCCCTCCCAGAGGACCTAC-CTCTTCAACGCTATTGACACCATCC 256375 Query 57904 CCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCA 57960 | ||| ||| ||||| || ||| | | ||||| | || || | ||| Sbjct 256374 CTTGCATCCGCAAAAAGGCTGACTGGGCTCTTCGCTGGATTAC---CGACAAGAGCTCCA 256318 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 | || ||| || | || |||| || || |||||||| ||||| ||||| || ||| Sbjct 256317 CCTTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGT-GCT 256259 Query 58021 TT-GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 || || | || || ||| | ||||| ||||| || ||||| ||||| || ||| |||| Sbjct 256258 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAAC 256199 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || || || ||||||||||| || || ||||| ||||| | | ||||||| Sbjct 256198 GAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTTCTCTTCTCTCAC 256139 Query 58140 ATTGTCAATAAACCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 |||| ||||| | | | | | ||| ||| || || ||| || ||| Sbjct 256138 ---CTCAA-CAACCGCCCCAGCAAGCAGCTGATCCAGGAAATCATTGTCGATGCCGTCAG 256083 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 || || | ||||| |||| || ||||| || ||| | || || |||||| || Sbjct 256082 AATTGAGCAGGAGTTCCTCACTGAGGCCCTCCCTTGCGCCCTTCTTGGCATGAACGCCGA 256023 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | ||| ||||||| ||||| || ||||| Sbjct 256022 CCTCATGAAGCAGTACATCGAGTTCGTCGCCGA 255990 >seq43 Length=285406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || ||||| |||| ||||| | ||||||| | Sbjct 263554 TTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCCGACACGATT 263495 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| |||| || ||||||||| || | ||||||||||||||||| || Sbjct 263494 GACAATGTCAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAGCGCCTG 263435 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347 || || |||||||| ||| | || || Sbjct 263434 ATTTTTGCTGGCAAGCAGCTCGAGGA 263409 >seq81 Length=180685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 25346 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 25287 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | ||||| |||| || ||||||||| ||| | || || | Sbjct 25286 CTAGCGACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTG 25227 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||| || || ||||| ||||| ||| | || || Sbjct 25226 ACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGA 25187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764405195360