Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq46 113 9e-20 seq86 86.0 1e-11 >seq46 Length=277877 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||||||||| || || || |||||||| || ||||| ||||| ||||| |||||| Sbjct 256300 GTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGG 256241 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | ||||||| || |||| ||||| ||| |||| || | || Sbjct 256240 CTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGAT 256181 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || ||||||||| ||| | || || Sbjct 256180 GAGGGTCTCCACACCGACTTTGCCTGCCTTCTCTT 256146 >seq86 Length=170212 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| |||||||| || || || ||||||| || | ||||| || || | ||||| Sbjct 126930 ACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTC 126871 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---AC 94508 || |||||||||||||||||| |||||||| || | ||| || || || | || Sbjct 126870 GGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCA---CTGGCCGTTCTGCTCAAC 126814 Query 94509 TCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATC 94568 | || |||||| ||||| | | ||||| || |||| ||||| | | | || || Sbjct 126813 ACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTC 126754 Query 94569 TTCATTACCGGCATTCTTTCTGCAGTCAA 94597 ||| |||||| ||||| | | ||||| Sbjct 126753 TTCCTTACCGTGGTTCTTGCGGAGGTCAA 126725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579460901890