Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq86 156 5e-33 seq46 113 6e-20 >seq86 Length=170212 Score = 156 bits (172), Expect = 5e-33 Identities = 618/966 (64%), Gaps = 6/966 (1%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || ||||| ||||||| | | | | || | || ||||||||||| Sbjct 127134 AGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCA 127075 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || || | ||| || || | || | || |||||||| ||| || ||||| Sbjct 127074 CAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATC 127015 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || | || || ||| |||| | || | || || | ||| | Sbjct 127014 CTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAA- 126956 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGAGTATACAA 63184 | || | ||||| | | | | || |||| || ||||||| |||| Sbjct 126955 GCTTCTGGGCCTTGACGGTCT-TGCGACCCTTGCCTTCCT-TTTCGTACTTTTCGTACAG 126898 Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAA 63244 |||||||||||| || |||| | | | | | ||| || || | || ||||| | Sbjct 126897 AGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAG 126838 Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 | ||||| |||| | || || || ||||| || ||||| || ||||| || || | Sbjct 126837 AGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAG 126778 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 || ||||| | | | || || || || ||||| || || |||||| | Sbjct 126777 GAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTC 126718 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| || Sbjct 126717 GAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCC 126658 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 ||||| || | ||| | |||||||| || | || | | ||| |||| |||||||| Sbjct 126657 ACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTT 126598 Query 63485 TGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAG 63544 ||| | || |||||||| | ||| ||| ||| |||||||||| || || Sbjct 126597 GGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAG 126538 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || ||||| |||||||| | ||||| || | || || |||||||| Sbjct 126537 ACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCC 126478 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || || || || || |||||| | || || || ||| | ||| | | | ||| Sbjct 126477 CTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGT 126418 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || || || || | ||| ||||||||||| || || || || | || ||||| Sbjct 126417 ACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGTA 126358 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 |||||||| | || | || | || || || || |||||||| | ||| Sbjct 126357 AGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATCAT 126298 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 |||||| || | ||| |||| | | | | || | | ||| ||| ||| | || Sbjct 126297 GTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTCGAGGGT 126238 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 || || || || || | ||| ||||| || ||||| | ||| |||| | || || Sbjct 126237 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTGCCGAGTCGAACTC 126178 Query 63905 ATCCTT 63910 ||||| Sbjct 126177 GTCCTT 126172 >seq46 Length=277877 Score = 113 bits (124), Expect = 6e-20 Identities = 361/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| |||||||| || | || | ||||| ||||| || || Sbjct 256155 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGG 256214 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 256215 CCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 256274 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33758 || || || || ||||||||||| | || | || || | || || |||| Sbjct 256275 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTA 256334 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||||||| || ||||| || | ||||| || || || || || || Sbjct 256335 ATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTG 256394 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| ||| | | | || || | ||||| ||||| | || || | Sbjct 256395 AAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTC 256454 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | |||||||| ||| Sbjct 256455 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 256514 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| || || || || | | || ||||| || || ||||| ||| || Sbjct 256515 TGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCG 256574 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA--GTTTATTCCAA 34055 || || || | | || || || | || ||||| | || | || ||||| Sbjct 256575 AAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAG 256634 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | | || || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 256635 TCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 256694 Query 34116 TTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 256695 TTGTACATTTGCCAGAT 256711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814781566240