Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25]
358 sequences; 40,416,174 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq86 156 5e-33
seq46 113 6e-20
>seq86
Length=170212
Score = 156 bits (172), Expect = 5e-33
Identities = 618/966 (64%), Gaps = 6/966 (1%)
Strand=Plus/Minus
Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007
||| || || || || ||||| ||||||| | | | | || | || |||||||||||
Sbjct 127134 AGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCA 127075
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
|| || | ||| || || | || | || |||||||| ||| || |||||
Sbjct 127074 CAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATC 127015
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || ||||| || | || || ||| |||| | || | || || | ||| |
Sbjct 127014 CTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAA- 126956
Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGAGTATACAA 63184
| || | ||||| | | | | || |||| || ||||||| ||||
Sbjct 126955 GCTTCTGGGCCTTGACGGTCT-TGCGACCCTTGCCTTCCT-TTTCGTACTTTTCGTACAG 126898
Query 63185 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAA 63244
|||||||||||| || |||| | | | | | ||| || || | || ||||| |
Sbjct 126897 AGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAG 126838
Query 63245 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304
| ||||| |||| | || || || ||||| || ||||| || ||||| || || |
Sbjct 126837 AGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAG 126778
Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364
|| ||||| | | | || || || || ||||| || || |||||| |
Sbjct 126777 GAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTC 126718
Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424
| | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| ||
Sbjct 126717 GAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCC 126658
Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484
||||| || | ||| | |||||||| || | || | | ||| |||| ||||||||
Sbjct 126657 ACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTT 126598
Query 63485 TGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAG 63544
||| | || |||||||| | ||| ||| ||| |||||||||| || ||
Sbjct 126597 GGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAG 126538
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
||| || || || ||||| |||||||| | ||||| || | || || ||||||||
Sbjct 126537 ACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCC 126478
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664
|| || || || || |||||| | || || || ||| | ||| | | | |||
Sbjct 126477 CTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGT 126418
Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724
|| || || || | ||| ||||||||||| || || || || | || |||||
Sbjct 126417 ACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGTA 126358
Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784
|||||||| | || | || | || || || || |||||||| | |||
Sbjct 126357 AGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATCAT 126298
Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844
|||||| || | ||| |||| | | | | || | | ||| ||| ||| | ||
Sbjct 126297 GTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTCGAGGGT 126238
Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904
|| || || || || | ||| ||||| || ||||| | ||| |||| | || ||
Sbjct 126237 CTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTGCCGAGTCGAACTC 126178
Query 63905 ATCCTT 63910
|||||
Sbjct 126177 GTCCTT 126172
>seq46
Length=277877
Score = 113 bits (124), Expect = 6e-20
Identities = 361/557 (65%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| |||||||| || | || | ||||| ||||| || ||
Sbjct 256155 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGG 256214
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || || ||||| || ||||| || ||||| ||||| | ||| ||||||
Sbjct 256215 CCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 256274
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33758
|| || || || ||||||||||| | || | || || | || || ||||
Sbjct 256275 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTA 256334
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| ||||||| || ||||| || | ||||| || || || || || ||
Sbjct 256335 ATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTG 256394
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| ||| | | | || || | ||||| ||||| | || || |
Sbjct 256395 AAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTC 256454
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || |||||||| || || ||||| || |||||||| || | |||||||| |||
Sbjct 256455 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 256514
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| ||||| || || || || | | || ||||| || || ||||| ||| ||
Sbjct 256515 TGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCG 256574
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA--GTTTATTCCAA 34055
|| || || | | || || || | || ||||| | || | || |||||
Sbjct 256575 AAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAG 256634
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|| | | || || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 256635 TCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 256694
Query 34116 TTATACATATTCCAGAT 34132
|| ||||| | ||||||
Sbjct 256695 TTGTACATTTGCCAGAT 256711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629814781566240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |