Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq86 205 1e-47 seq46 107 3e-18 >seq86 Length=170212 Score = 205 bits (226), Expect = 1e-47 Identities = 625/962 (65%), Gaps = 8/962 (1%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| ||| || || || |||||||| ||||||| | | | | || | || || ||| Sbjct 127139 GCGAGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCA 127080 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||| ||||| | ||||| || | || | || |||||||| ||| || Sbjct 127079 GTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 127020 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 |||||||| || || ||||| || | || || ||| |||| | || | || || | | Sbjct 127019 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATAC 126960 Query 79795 CAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTATTGTGT 79850 || | | || | ||||| | | |||| | ||| ||| ||||||| | | Sbjct 126959 CAAA-GCTTCTGGGCCTTGACGGT---CTTGCGACCCTTGCCTTCCTTTTCGTACTTTTC 126904 Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 || | |||||||||||| || |||| ||| | | ||||| || |||| ||| || Sbjct 126903 GTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCA 126844 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||| | | ||||| || | | || || || ||||| || ||||| || ||||| || Sbjct 126843 CATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAG 126784 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || | || ||||| | | | ||| || || || ||||| || || || Sbjct 126783 GGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAG 126724 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 |||| | | | ||| | ||||| || || | ||| ||||| | | | || || || || Sbjct 126723 GAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTT 126664 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150 ||| || ||||| || | ||| | |||||||| || | || | | ||| |||| || Sbjct 126663 GTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGAT 126604 Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 80210 ||| |||||||| || ||||| || | ||| ||| ||| |||||||||| || Sbjct 126603 ACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGAT 126544 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 ||||| || || || ||||| |||||||| | ||||| || | ||||| || Sbjct 126543 GTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTA 126484 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||||||||| || || || || |||||| | || || || ||| | ||| | | Sbjct 126483 GATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTG 126424 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 ||| || || || || | ||| ||||||||||| || || || |||| || Sbjct 126423 GGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAG 126364 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCAT 80450 ||||| |||||||| | || | || | || || || || |||||||| Sbjct 126363 GTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCAT 126304 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 | ||||||||| || | ||| | |||| | || | || | | ||| ||| ||| Sbjct 126303 GATCATGTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTC 126244 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 | || || || || || || | ||| ||||| || ||||| | ||| |||||| Sbjct 126243 GAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTGCCGAGTC 126184 Query 80571 GA 80572 || Sbjct 126183 GA 126182 >seq46 Length=277877 Score = 107 bits (118), Expect = 3e-18 Identities = 245/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| |||||||| || | || || ||||||||||| || || Sbjct 256155 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGG 256214 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || ||||| || ||||| || || | || |||||| Sbjct 256215 CCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 256274 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGT 50136 || || || || || |||||||| || || | || || | ||| || |||| Sbjct 256275 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTA 256334 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||||| || ||||| || | ||||| || || || || || || Sbjct 256335 ATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTG 256394 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | | | || || | ||||| ||||| | || || | Sbjct 256395 AAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTC 256454 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || |||||||| || || ||||| || |||||||| || | |||||||| ||| Sbjct 256455 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 256514 Query 50317 TGCACTTC 50324 || ||||| Sbjct 256515 TGGACTTC 256522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265585747120