Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq86 181 1e-40 >seq86 Length=170212 Score = 181 bits (200), Expect = 1e-40 Identities = 520/796 (65%), Gaps = 8/796 (1%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||| | ||| || || || |||||||| ||||||| | | | | || | ||||| || Sbjct 127140 GGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTC 127081 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 |||||| || || | |||||| || | || | || |||||||| ||| || Sbjct 127080 AGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 127021 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 |||||||| || || || || || | || || ||| |||| | || | || || | Sbjct 127020 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATA 126961 Query 71877 CCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGTATTGTG 71932 ||| | | || | ||||| | | |||| | ||| ||| ||||||| | | Sbjct 126960 CCAAA-GCTTCTGGGCCTTGACGGT---CTTGCGACCCTTGCCTTCCTTTTCGTACTTTT 126905 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 || | |||||||||||| || || | | | | | ||||| || || | || | Sbjct 126904 CGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGC 126845 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 |||| | | ||||| || | | | || || ||||| || ||||| || ||||| | Sbjct 126844 ACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGA 126785 Query 72053 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 | || | || ||||| | | | ||| || || || ||||| || || | Sbjct 126784 GGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAA 126725 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTT 72172 ||||| | | | ||| | ||||| || || | ||| ||||| | | | || || || | Sbjct 126724 GGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCT 126665 Query 72173 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 72232 |||| || ||||| || | ||| | |||||||| || | || | | ||| |||| | Sbjct 126664 TGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGA 126605 Query 72233 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA 72292 |||| ||||||| || ||||| || | ||| ||| ||| |||||||||| | | Sbjct 126604 TACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGA 126545 Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 | ||||| || || || ||||| |||||||| | ||||| || | ||||| | Sbjct 126544 TGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGT 126485 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||||||||| ||||| || ||| |||||| | || || || ||| | ||| | Sbjct 126484 AGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCT 126425 Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 | ||| || || || || | ||| ||||||||||| || || || |||| | Sbjct 126424 GGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGA 126365 Query 72473 GATTGTACGTCTCAAT 72488 | ||||| |||||||| Sbjct 126364 GGTTGTAAGTCTCAAT 126349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 320/492 (65%), Gaps = 5/492 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGA-GAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 |||| ||| | || ||||| ||||| ||| | || || | |||||| || |||||||| Sbjct 128057 TCCTGGTCTACAGTGAACTGGATGGGCTGAGCA-GCAGCCTGCGTACGGAGGTAGTACAT 127999 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 ||| || || ||||| | |||| ||| |||||||| || || | ||| | | Sbjct 127998 GCCGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTAATCTTGCCCATGGT 127939 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || ||| |||||||| || | ||||| ||||| |||||||| || | || || Sbjct 127938 GGGTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCACGATCGGC 127879 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| || | || || || | ||| ||||| | || ||||| | ||| || Sbjct 127878 AGCCATCTTGACAATGGTACGCTGAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGAT 127819 Query 71028 ATCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 || | |||| | |||| | ||||| || || || || || ||||| || | || || Sbjct 127818 GTCATTGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | ||| ||| | |||| | | | || || || || || || || Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGAC 127699 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || || || | | || | || ||| || ||| ||| || || || | | Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 ||| || || || | ||| |||| ||| || ||||| |||||||| || | || ||||| Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579 Query 71265 ATTTCTAAGACC 71276 || | || ||| Sbjct 127578 GTTGCGAACACC 127567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136196652080