Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18 123 3e-23 >seq18 Length=383124 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| | ||||| ||||| || || || |||||||| |||||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| || || || || || | || ||||| |||||||||||||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || ||||| || | | || | ||||| | | ||| || Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || ||||| ||||||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCATA 57226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || || | |||| || || |||| || || || || ||||||||||| Sbjct 57912 TGGCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCA 57853 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || | || || | || ||||||||| |||||||||| ||||| || || Sbjct 57852 GAGAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGC 57793 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || || || ||||| || ||||| || | | || | ||| |||| | || Sbjct 57792 GGGATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCG 57733 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | ||||||||| ||||| || || ||||| || |||||| Sbjct 57732 ACTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCATA 57682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012131110560