Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46 224 1e-53 seq86 125 1e-23 >seq46 Length=277877 Score = 224 bits (248), Expect = 1e-53 Identities = 574/857 (67%), Gaps = 49/857 (6%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 256711 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 256652 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGA----GTTTAT 125134 ||||||||||| |||| ||| | | | |||| || || ||||| || || Sbjct 256651 TCCAAGGACCTTCACGACTGGAACAACAGGTTGAACGA---CGA-CGAGAAGTTCTTCAT 256596 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || |||||| | || ||||| || | ||||||||| || ||||| || || || || || Sbjct 256595 CTCCCACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGA 256536 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 || ||| | || | || || |||| ||| ||||| ||||| ||||| ||| Sbjct 256535 -GCGCTTCAGTGGCGAAGTCCAGATCCCCGAGG-CTCGCTGCTTCTACGGTTTCCAGATC 256478 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | ||||| || || |||| ||||| || Sbjct 256477 ATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACTTACATCAAGGAG 256418 Query 125313 CCGCAACGTAAACACAT-GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || | | | || | ||||| ||||| || ||||| | || | || || ||||| Sbjct 256417 CC-CTCCCAGAGGACCTACCTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAA 256359 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG---TCTTCGTACGCCGACAGACT 125428 |||| | |||| |||| ||||| | ||||||| || | | ||| | | || Sbjct 256358 GGCTGACTGGGCTCTTCGCTGGAT---TACCGACAAGAGCTCCACCTTTGCCCAGCGTCT 256302 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 || || || || ||||| ||||| |||||||| ||| ||| || ||||||| || Sbjct 256301 CGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTG 256242 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||||||||||||||| |||||||| || || || |||||| | || || || || Sbjct 256241 GCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGA 256182 Query 125549 CGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAG 125606 ||||| || ||| ||||||||| || || || || || || | | | ||| || Sbjct 256181 TGAGGGTCTCCACACCGACTTTGCCTGCCTTCTCTTCTCTCACCTCAACAACCGCCCCAG 256122 Query 125607 -----TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAG 125661 || ||||||| ||| | |||||| ||||||||| || || | Sbjct 256121 CAAGCAGCTGATCCAG----GAA---------ATCATTGT---CGATGCCGTCAGAATTG 256078 Query 125662 AACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 | || ||||| || || || |||| || | | | ||||||||||| | | || | Sbjct 256077 AGCAGGAGTTCCTCACTGAGGCCCTCCCTTGCGCCCTTCTTGGCATGAACGCCGACCTCA 256018 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CA 125778 || ||||||| ||||| || || |||||||| || || | ||| || | Sbjct 256017 TGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTCCTTGTCG---CCCTCGGCAACGAGA 255961 Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 |||| |||| | | || ||||| || |||||| | ||| || || | || |||| Sbjct 255960 AGATCTACAGGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGA 255901 Query 125839 CCAACTTTTTCGAGAAG 125855 ||||||| ||||||||| Sbjct 255900 CCAACTTCTTCGAGAAG 255884 >seq86 Length=170212 Score = 125 bits (138), Expect = 1e-23 Identities = 322/485 (66%), Gaps = 4/485 (1%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| ||||| || || || || ||| | ||| ||||| | || ||| Sbjct 126640 CGCTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTCGCCATCTACCTCGAGCCT 126699 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || || | || | ||||| ||| || ||||||| Sbjct 126700 TGGCACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGAAGAGGTG 126759 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | || | || ||| |||||| | || ||| | ||||||||||| || | Sbjct 126760 CGCGCTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAG 126819 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | ||| | |||| || |||||||| || || || || || |||| | Sbjct 126820 CAGAACGGCCAGTGGACTCTCATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTAC 126879 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACG 97162 || || ||||| || || |||| ||||| | || ||| | || |||| Sbjct 126880 GGTGACGAGTTCGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCAAGGGTCGCAAGACC 126939 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 ||| | || | |||| || ||| | |||||| | ||| ||| ||||| || | | Sbjct 126940 -GTCAAGGCCC-AGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACC 126997 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| |||||||||||| || || ||||| || ||||| || |||| |||| Sbjct 126998 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACCA 127057 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 || ||||||| |||||||| || ||| | |||||| | ||||||| ||| || | Sbjct 127058 TCCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCTGCTCCGGATGAGGTTGCCG 127117 Query 97342 TTTGC 97346 ||||| Sbjct 127118 TTTGC 127122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055883760080