Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq43 84.2 5e-11 >seq43 Length=285406 Score = 84.2 bits (92), Expect = 5e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || || || | || || || || || || ||||||||||| Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTC 104490 || | ||| || || || || || || || || ||||||||||| ||| || ||||| || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGC-TTGACATTGTC 263494 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || ||| | || ||||| || || || ||||| || || || || || || || Sbjct 263495 AATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393118679464