Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq86 167 3e-36 seq46 113 6e-20 >seq86 Length=170212 Score = 167 bits (184), Expect = 3e-36 Identities = 618/962 (64%), Gaps = 6/962 (1%) Strand=Plus/Minus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||| | ||| || || || |||||||| ||||||| | | | | || | || ||||| Sbjct 127140 GGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTC 127081 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 |||||| || || | ||| || || | || | || |||||||| ||| || Sbjct 127080 AGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 127021 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||||| || || ||||| || | || || ||| |||| | || | || || | Sbjct 127020 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATA 126961 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGTGT 63127 ||| | | || | ||||| | | | | || |||| || ||||||| | Sbjct 126960 CCAAA-GCTTCTGGGCCTTGACGGTCT-TGCGACCCTTGCCTTCCT-TTTCGTACTTTTC 126904 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 |||| |||||||||||| || |||| | | | | ||||| || || | || || Sbjct 126903 GTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCA 126844 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||| | | ||||| |||| | || || || ||||| || ||||| || ||||| || Sbjct 126843 CATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAG 126784 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || | || ||||| | | | || || || || ||||| || || || Sbjct 126783 GGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAG 126724 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 |||| | | | ||| | ||||| || || | ||| ||||| | | | ||||| || || Sbjct 126723 GAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTT 126664 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| || ||||| || | ||| | |||||||| || | || | | ||| |||| || Sbjct 126663 GTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGAT 126604 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 |||||| ||| | || |||||||| | ||| ||| ||| |||||||||| || Sbjct 126603 ACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGAT 126544 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 ||||| || || || ||||| |||||||| | ||||| || | || || || Sbjct 126543 GTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTA 126484 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||| ||||| || || || || |||||| | || || || ||| | ||| | | Sbjct 126483 GATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTG 126424 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 ||| || || || || | ||| ||||||||||| || || || || | || Sbjct 126423 GGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAG 126364 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||||| |||||||| | || | || | || || || || |||||||| Sbjct 126363 GTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCAT 126304 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| || | ||| | |||| | | | || | | ||| ||| ||| Sbjct 126303 GATCATGTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTC 126244 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 | || || || || || || | ||| ||||| || ||||| | ||| |||||| Sbjct 126243 GAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTGCCGAGTC 126184 Query 63848 GA 63849 || Sbjct 126183 GA 126182 >seq46 Length=277877 Score = 113 bits (124), Expect = 6e-20 Identities = 361/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| |||||||| || | || || ||||||||||| || || Sbjct 256155 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGG 256214 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || ||||| ||||| | || |||||| Sbjct 256215 CCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 256274 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33480 || || || || ||||||||||| | || | || || | || || |||| Sbjct 256275 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTA 256334 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||||| || ||||| || | ||||| || || || || || || Sbjct 256335 ATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTG 256394 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| ||| | | | || || | ||||| ||||| | || || | Sbjct 256395 AAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTC 256454 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || |||||||| || | |||||||| ||| Sbjct 256455 TCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 256514 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || ||||| || || || || | | || ||||| || || || || ||| || Sbjct 256515 TGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCG 256574 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA--GTTTATTCCAA 33777 || || || | | || || || | || ||||| | || | || ||||| Sbjct 256575 AAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAG 256634 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | | || || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 256635 TCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 256694 Query 33838 TTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 256695 TTGTACATTTGCCAGAT 256711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944412311280