Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq86 412 9e-110 >seq86 Length=170212 Score = 412 bits (456), Expect = 9e-110 Identities = 1157/1750 (66%), Gaps = 42/1750 (2%) Strand=Plus/Plus Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 || |||| | |||| ||| || || ||||| ||| | |||||||||||| | |||||| Sbjct 126266 TCGATGGCCAGATTGCTGAGCGTCCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCT 126325 Query 363491 ATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGC-TCGTGTA-TT 363548 | || ||||| | ||||| || || || || | || | || | || Sbjct 126326 GGGGAGACGACGTTGAGCGGGTCATTGAGACTTACAACCTCAT--GTCCCTCAAGACCTT 126383 Query 363549 CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 ||| ||||| | || || | | ||| || || |||| | || ||| | ||||| || Sbjct 126384 CACCCACGCTTCTCCCACCCTCTTCAACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTG 126443 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 ||| || | | |||||||| || |||||||| |||| || || || |||| || Sbjct 126444 CTTCCTGGTCGACATGAAGGAAGACAGTATCGAGGGCATCTACGATACCCTCAAGACCTG 126503 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-AC 363727 || | || || |||| || ||||| || ||| | |||||| ||||||| || Sbjct 126504 CGCCATGATCTCTAAGATGGCTGGCGGTATCGGTCTCAACATCCACCGCATTCGTGCCAC 126563 Query 363728 AGAACAGTTACATTCGC-GGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||||| ||| || || | || | | || || || | ||||||||||| || Sbjct 126564 TGG-CTCCTACAT-CGCTGGTACCAACGGCACA-TCCAACGGTATCGTTCCCATGCTCCG 126620 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| || || | ||||| ||||||||||| ||||| || || || Sbjct 126621 TGTCTTCAACAACACCGCCCGCTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTT 126680 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || ||||||||| || |||||| | || ||||| ||||| ||||| || || Sbjct 126681 CGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAA 126740 Query 363906 C-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 | |||| || |||||| |||| || || ||||| ||| ||| || ||| | | || Sbjct 126741 CCACGGTAAGGAAGAGG---TGCGCGCTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGA 126797 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAAT 364021 | ||| |||||||| || ||| ||| | | ||| | ||| | ||||| ||||| | Sbjct 126798 TCTTTTCATGAAGCGTGTTGAG-CAGAACGGCCAGTGGACTCTCATGTGCCCTCACGAGT 126856 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || ||| |||| || | |||||||| | | ||||| ||||||||||| ||| Sbjct 126857 GCCCTGGCCTTGCCGACGTTTACGGTGACGAGTTCGAAGCTCTGTACGAAAAGTACGAAA 126916 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||| || |||| ||| ||||| | || |||||||| |||| ||||||| | || Sbjct 126917 AGGAAGGCAAGGGTCGCAAGACCGTCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGG 126976 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| |||||| || | |||| ||| | ||||| ||| | |||||||||||| | Sbjct 126977 CCCAGACTGAGACGGGCAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTA 127036 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| ||||| | || |||| |||||| || || |||||||| || ||| Sbjct 127037 ACCAGAAGAACCTGGGTACCA-TCCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTAC 127095 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTT--- 364317 | ||||| || ||| |||||| || |||||||| || |||| ||| | || ||| Sbjct 127096 TCTGCTCCGGATGAGGTTGCCGTTTGCAACCTTGCCTCTCTCGCCCTTTCCGCCTTTATC 127155 Query 364318 --GTAAAAG-ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTA 364372 || || ||| ||| ||| | || | || | || || || | || | | Sbjct 127156 GACTACGAGAATGCCTCTTACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTCGTCGTC 127215 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 | |||| ||| ||||| | || |||| || | || || || || ||| | Sbjct 127216 C--GCAACCTCAACAAGATCATTGACATCAACCACTACCCCGTTAAGGAGGCCCACAACA 127273 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 || |||||||| || || |||||| | ||||| ||||| || ||||| | ||| || Sbjct 127274 GCAACATGCGTCACCGTCCCATTGGTGTCGGTGTTCAGGGTCTTGCTGATGCTTTCTTGG 127333 Query 364493 TGCTCAAGATGGCATTTGATTCGCCTGAC---GCTCGTGTTCTAAATAAGGAGATCTTTG 364549 ||| ||| | || |||| ||||| ||| | || || | |||| || | Sbjct 127334 CTCTCCGCATGCCCTTCGATT---CTGACGCGGCTAGCAAGCTCAACATCCAGATTTTCG 127390 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | || || || ||||| | ||||| || || | | || || |||| || Sbjct 127391 AGACCATCTACCACGCCGCTCTTACTGCCTCTTGCCAGCTCGCCAAGGAGCAGGGCCCGT 127450 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 || | || || || || || || | || ||||||| |||| | || | ||||| | Sbjct 127451 ACGCCACCTACGAAGGCTCGCCCGTCTCCCAGGGAATCCTCCAATACGACATGTGGAACG 127510 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 |||| || | || ||| ||||| | | || | || | |||||| | ||| Sbjct 127511 TCACCCCTACCAACCTCTGGGACTGGACTGCTCTCAAGGCGGACATCAAGAAGTACGGTG 127570 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 ||||||| || | || || |||||||| ||||| ||| | ||||| || || | Sbjct 127571 TTCGCAACAGTCTGCTGCTTGCTCCTATGCCCACTGCTTCCACTTCTCAGATTCTTGGCA 127630 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 |||||||||||||||| || | || || | || ||| || || || |||| | Sbjct 127631 ACAACGAGTGCTTCGAGCCTTACACCTCTAACATCTACCAACGACGTGTGCTCGCCGGCG 127690 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 | || | ||| || || | || ||| ||||||| || || || ||| || Sbjct 127691 AGTTCCAGGTCGTCAACCCCTGGCTTCTCAGGGATCTTGTGGAGATGGGCCTTTGGTCTG 127750 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC 364969 | |||||||||| ||||| || | |||||| | |||||||| | | | ||| Sbjct 127751 ATGCCATGAAGAACCGCATCATTGCTGAGGGCGGTTCTATCCAGAACATCCAAAGCATTC 127810 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG 365029 | | || | ||| || | || || ||||| ||||| ||||| ||| || ||||| Sbjct 127811 CCAATGACATCAAGGCTCTCTATAAGACCGTCTGGGAGATTTCTCAGCGTAC---CATTG 127867 Query 365030 ---ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | ||||| |||||||| ||||| || || |||| |||||| | ||| | || Sbjct 127868 TCAAGATGGCTGCCGATCGTGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATTCACA 127927 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 || | || ||| | |||| |||| |||||||||| ||| ||||| |||| Sbjct 127928 TGCGCGAACCCACCATGGGCAAGATTACCAGCATGCATTTCGCCGGCTGGAAGATGGGTC 127987 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 127988 TCAAGACCGG 127997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347621679956