Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq86 149 6e-31 seq18 149 6e-31 seq81 120 3e-22 seq43 93.3 4e-14 >seq86 Length=170212 Score = 149 bits (164), Expect = 6e-31 Identities = 911/1444 (63%), Gaps = 37/1444 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||||||||| | |||||| || || | |||||| ||| | || Sbjct 127706 TTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGC 127647 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||| || || |||| || | || |||||||| || | | Sbjct 127646 TCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGC 127587 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | |||| |||||||||||| |||| || | | ||| |||| Sbjct 127586 AGCAGACTG--TTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGAGCAGTCCAGTCCC 127529 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || || | |||| |||||||||||| || | || |||| | | |||| Sbjct 127528 AGAGGTTGGTAGGGGTGACGTTCCACATGTCGTATTGGAGGATTCCCTGGGAGACGGGCG 127469 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 ||||| ||| ||| |||| |||||||||| |||| || |||| Sbjct 127468 AGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAG 127409 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| ||| || |||||||| | || | || ||| Sbjct 127408 CGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAGAATCGA 127349 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | |||||||| || | |||||||| || || ||||| | || || || ||||| | Sbjct 127348 AGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAATGGGAC 127289 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 | || ||||||||| | ||| || | || || | || ||| || || | Sbjct 127288 GGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAATGATCT 127229 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAG 145595 | || | ||| || || || || | || | | ||| ||| | ||||| | | Sbjct 127228 TGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAAGAGG 127169 Query 145596 CCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCT 145655 | | || | | | | || | ||||| || || | || ||||| || || Sbjct 127168 CATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGGCAAGGTTGCAAACGGCAACCT 127109 Query 145656 CCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCA 145715 | || | | ||| | | ||||| | ||||| ||| | |||||| |||| Sbjct 127108 CATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCA 127049 Query 145716 GATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAG 145775 | || | ||| ||||| || | |||||| || ||||||||||||||| | || ||| | Sbjct 127048 GGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCG 126989 Query 145776 TCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGC----ACGCACCTGC 145828 |||| ||| | ||| | ||| | | | || | ||| || ||| | ||| Sbjct 126988 TCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGC---TTCTGGGCCTTGACGGTCTTGC 126932 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | | ||| || | |||||| |||| | |||||| || ||| || ||||| Sbjct 126931 GACCCTT----GCCTTCCTTTTCGTACTTTTCGTACAGAGCT--TCGAACTCGTCACCGT 126878 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 | |||| ||||| || |||| || || ||||| || | ||| |||||| | Sbjct 126877 AAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCT 126818 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 || |||| ||| || | ||| || | ||| || || | | ||||| || || Sbjct 126817 CAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGC-GCGC 126759 Query 146007 A-ATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCC 146063 | || || ||| ||| | || | | ||| | ||| ||| || ||||||| Sbjct 126758 ACCTCTTCCTTACCGTGGTTCTTGC-GGAGGTCAAGGA-ACTCGAAGACATCGGCGTGCC 126701 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGAC 146120 | || || | |||| ||||| || || || |||||||||||||| |||| | Sbjct 126700 AAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGC 126641 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAG 146180 | | ||||||| ||||| || | |||||| ||| ||| ||| | |||||| ||| Sbjct 126640 GGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGATGTGCCGTTGGTAC 126581 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCG 146239 || || ||| || || | || || | || | |||| |||||| ||| Sbjct 126580 CAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCA 126521 Query 146240 TACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GC 146297 | ||| || || ||||||| ||| || ||||||||||| || || || || | Sbjct 126520 T-CTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCTCGATACTGTCTTCC 126462 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| ||| ||| |||||||| | | ||| | | || || || || ||| | Sbjct 126461 TTC--ATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGA 126404 Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 || || ||||| || || | || || ||| | || || || || | Sbjct 126403 GGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGTAAGTCTCAATGACCC 126344 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | || |||||| || || || | ||| || ||||||| |||||| ||||| |||| Sbjct 126343 GCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCT 126284 Query 146478 CCGC 146481 | || Sbjct 126283 CAGC 126280 >seq18 Length=383124 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | ||| |||||||| ||||||||||| |||||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| | || | ||||||||| || ||||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||||| | || | ||| |||| || || | Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| ||||| || ||||| || ||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| |||||| ||||||||||| ||| Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||||||| || || ||| Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | | || | || |||| ||||| | Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACC 57502 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| || || || |||||||||||||| Sbjct 57501 TCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | ||| |||||||| || |||||||| ||| Sbjct 57225 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 57166 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | ||||||||| || | || || ||||||||||| || || Sbjct 57165 AGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGA 57106 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||||| | || | ||||| | ||||||| Sbjct 57105 ATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACC 57046 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 57045 TCGAGGGTGATGGTCTTGCCGGT 57023 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||||||| || || | || |||||| |||||||||||||| Sbjct 57910 GCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGA 57851 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| | |||||| || || |||| | |||||||||||| || || Sbjct 57850 GAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 57791 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | | || | ||||| | ||||||| Sbjct 57790 GATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGAC 57731 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | || || |||||||||||||| Sbjct 57730 TTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 >seq81 Length=180685 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||| |||||| || |||||||| ||| Sbjct 25115 CCACCACGGAGGCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 25174 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 25175 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 25234 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||||| | || | || ||| | ||||| | Sbjct 25235 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACC 25294 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || || || || || || ||||| |||||||||| Sbjct 25295 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGA 25343 >seq43 Length=285406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| || | | Sbjct 263374 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAA 263433 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| || |||||||||| | | Sbjct 263434 TCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGT 263493 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||| | |||| || | ||| || || || || || || |||| Sbjct 263494 CAATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 263553 Query 131225 A 131225 | Sbjct 263554 A 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010687742720