Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18 127 1e-24 seq81 95.1 8e-15 >seq18 Length=383124 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| |||||| ||||||||||||||||| ||||| ||||||||||| | || | Sbjct 57897 CGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCA 57838 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || || || || || ||||| || || || || || || | |||| || || ||| Sbjct 57837 TCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 57778 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || ||||||||||| || | | ||||| | || ||||| | ||||| Sbjct 57777 TCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATC 57718 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||||||| || ||||| |||||||| Sbjct 57717 GTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| || || ||||||||||| ||||| ||||| || | Sbjct 57683 TACCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGG 57624 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | || ||||| || || || || || || ||||| | | Sbjct 57623 AGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTG 57564 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || |||||||| || || | || || || | |||| Sbjct 57563 GGATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAA 57504 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || || | || || ||||| |||||||| Sbjct 57503 CCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 >seq81 Length=180685 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| || || ||||| || || | || | || || | || Sbjct 25139 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 25198 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || || || | ||||| ||| || |||||| || || Sbjct 25199 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 25258 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| ||||| | || || || | | || || || | || ||||| || ||||| Sbjct 25259 TGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 25318 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 | ||| |||||||| ||||||||| || Sbjct 25319 AGGGTCTTCACGAAGATCTGCATGATT 25345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945738583498