Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq86 196 6e-45 >seq86 Length=170212 Score = 196 bits (216), Expect = 6e-45 Identities = 620/957 (65%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 ||| || || || |||||||| ||||||| | | | | || | || ||||||||||| Sbjct 127134 AGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCA 127075 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || | |||||| || | || | || |||||||| ||| || ||||| Sbjct 127074 CAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATC 127015 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | || || ||| |||| | || | || || | ||| | Sbjct 127014 CTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAA- 126956 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTGTATACA 62987 | || | ||||| | | ||| | ||| ||| ||||||| | |||| Sbjct 126955 GCTTCTGGGCCTTGACGGTC---TTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACA 126899 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 |||||||||||| || |||| | | | || ||||| || || | || ||||| | Sbjct 126898 GAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGA 126839 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||||| |||| | || || || ||||| || ||||| || ||||| || || | Sbjct 126838 GAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAA 126779 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || ||||| | | | || || || || ||||| || || |||||| Sbjct 126778 GGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACT 126719 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | ||| | ||||| || || | ||| ||||| | | | ||||| || ||||| | Sbjct 126718 CGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGC 126659 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| || | ||| | |||||||| || | || | | ||| |||| ||||| | Sbjct 126658 CACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGT 126599 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63347 ||||||| || ||||| || | ||| ||| ||| |||||||||| || | Sbjct 126598 TGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGA 126539 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 |||| || || || ||||| |||||||| | ||||| || | ||||| ||||||| Sbjct 126538 GACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGC 126479 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 |||| ||||| || ||| |||||| | || || || ||| | ||| | | || Sbjct 126478 CCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAG 126419 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | ||| ||||||||||| || || || || | || |||| Sbjct 126418 TACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGT 126359 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | |||||||| | || | || | || || || || |||||||| | || Sbjct 126358 AAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATCA 126299 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 ||||||| || | ||| | |||| | | | || | | ||| ||| ||| | | Sbjct 126298 TGTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATGATCGTTCGAGGG 126239 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63704 | || || || || || | ||| ||||| || ||||| | ||| |||||| || Sbjct 126238 TCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTGCCGAGTCGA 126182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629164496800