Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq46 167 3e-36 >seq46 Length=277877 Score = 167 bits (184), Expect = 3e-36 Identities = 372/558 (67%), Gaps = 3/558 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| || || || || || | ||| ||| || || | Sbjct 256154 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAG 256213 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || || ||| ||| || || Sbjct 256214 GCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAA 256273 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || ||||| ||||| || || | ||| | |||||| | | | || | | Sbjct 256274 GATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGT 256333 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| | |||||| || || ||||| || ||||| | || || |||||||| Sbjct 256334 AATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTT 256393 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || ||||| | || | | || ||||| || ||||| | || || || | Sbjct 256394 GAAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGT 256453 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || || | |||||||| || ||||| |||||||| || | ||| || | ||| Sbjct 256454 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGAT 256513 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| ||||| | || | ||| ||||| || |||||||| ||||||||||| || || Sbjct 256514 CTGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGC 256573 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCA 93567 || ||||| | || || || || ||||| || || || | | || | ||| Sbjct 256574 GAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCA 256633 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| || || || || ||||| | || ||| | ||||| || || || || || || Sbjct 256634 GTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 256693 Query 93628 TTTGTACATATCCCATAT 93645 |||||||| | ||| || Sbjct 256694 CTTGTACATTTGCCAGAT 256711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858308047920