Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 145 6e-30 seq81 120 3e-22 seq43 116 3e-21 seq86 89.7 4e-13 >seq18 Length=383124 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || |||| ||||| |||||| | || Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| || |||||||||||||| ||||| |||||||| Sbjct 57287 GACACTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAG 57346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | || || |||||| | ||| |||||| Sbjct 57347 CAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAAC 57406 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | ||| | ||| | || | ||||| ||| Sbjct 57407 ATTCAGAAGGAGTCTACCCTTCATCTCGTTCTTCGTCTACGCGGTGGT 57454 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || | | |||||| | ||| || |||| ||| Sbjct 57023 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGATACCATTGACAATGTCAAGCAA 57082 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| ||||| || || || | || ||||||||||| Sbjct 57083 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGCAAG 57142 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| ||||||| | ||||| |||||||| || || || || ||| | || Sbjct 57143 CAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 57202 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||||| ||| Sbjct 57203 CTTGTCCTCCGCCTGCGCGGTGGT 57226 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || | ||||| || ||| | ||||| || || || | || Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || ||||| || || |||||||||||||| ||||| ||||| Sbjct 57515 GACACCATCGACAACGTAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 57574 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| |||||| ||||||| |||||| Sbjct 57575 CAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAAC 57634 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || |||| | || || || Sbjct 57635 ATTCAGAAGGAGAGCACCCTGCACTTGGT 57663 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || ||| | || || ||||| || | | Sbjct 57683 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCG 57742 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||| || || |||||||||||||| || || || || Sbjct 57743 GATACGATTGATAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 57802 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||||| |||||| ||| ||| |||| ||||||||| Sbjct 57803 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACAAC 57862 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 57863 ATTCAGAAGGA 57873 >seq81 Length=180685 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | | | Sbjct 25341 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 25282 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || || ||||||||||| || || || || || Sbjct 25281 GACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 25222 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| ||||||| ||||||| |||||| Sbjct 25221 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 25162 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 25161 ATCCAGAAGGA 25151 >seq43 Length=285406 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || || |||| || | ||| || |||| || Sbjct 263539 ACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCCGACACGATTGACAATGTCAAGCAG 263480 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || ||||| || || || || || ||||| ||||| Sbjct 263479 AAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAGCGCCTGATTTTTGCTGGCAAG 263420 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 263419 CAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 263376 >seq86 Length=170212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 198/294 (67%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 130102 AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCC 130161 || |||||||| ||| | | ||||||||||| || || | || || || | || || Sbjct 126731 AGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCA 126672 Query 130162 TTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATT 130218 || ||| || || |||||||||| ||| ||| |||||| |||| || | ||| Sbjct 126671 GGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATG 126612 Query 130219 GCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACG 130278 | | | ||||||| |||||||| || | | ||| | |||| || |||| | Sbjct 126611 GGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATG 126552 Query 130279 TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTAG 130337 || | | | ||||| || ||||| | | || || |||| ||||| || | || Sbjct 126551 CGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTG-AG 126493 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 || || || ||||| ||||||||||||| || |||| | ||||| ||||| Sbjct 126492 GGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGA 126439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726168674270