Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq86 152 1e-31 seq33 109 1e-18 seq148 87.8 4e-12 seq172 86.0 1e-11 seq138 86.0 1e-11 seq133 86.0 1e-11 seq132 86.0 1e-11 seq126 86.0 1e-11 seq112 86.0 1e-11 seq108 86.0 1e-11 seq107 86.0 1e-11 seq76 86.0 1e-11 seq55 86.0 1e-11 seq47 86.0 1e-11 seq44 86.0 1e-11 seq35 86.0 1e-11 seq30 86.0 1e-11 seq18 86.0 1e-11 seq14 86.0 1e-11 seq12 86.0 1e-11 >seq86 Length=170212 Score = 152 bits (168), Expect = 1e-31 Identities = 423/642 (66%), Gaps = 9/642 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||||||||| ||||| | | | | || | ||| Sbjct 127911 CTGGGACTGATCAATGAAGGCACCACGATCGGCAGCCATCTTGACAATGGTACGCTGAGA 127852 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| ||||| || | ||||||| ||| |||||| | ||||| Sbjct 127851 AATCTCCCAGACGGTCTTATAGAGAGCCTTGATGTCATTGGGAATGCTTTGGATGTTCTG 127792 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAA-GTCCCACGAG 293293 |||||| || || | ||||| || |||||||||| | || |||||| | |||| Sbjct 127791 GATAGAACCGCCCTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTC 127732 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 || || || | || ||| | | |||||| || ||||||| || ||||| || | Sbjct 127731 CACA-AGATCCCTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTC 127673 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| || ||| ||| || |||||||| || Sbjct 127672 GTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAG 127613 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470 | || || || |||||| ||||| | |||| ||| | ||||| |||||||| Sbjct 127612 TGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGT 127553 Query 293471 GCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTG-AGGTGTAACACCCCAGAGATGATA 293528 || | |||| | | ||||||| |||| || | ||| || || ||| | | || Sbjct 127552 CCGCCTTGAGAGCAGTCCAGTCCCAGAG--GTTGGTAGGGGTGACGTTCCACATGTCGTA 127495 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 || | ||| |||| | | | || || || || |||||| | ||||| ||||| | Sbjct 127494 TTGGAGGATTCCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTT 127435 Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648 | ||||| |||||| || || ||| || ||| ||| |||||| |||| ||| Sbjct 127434 GGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTT 127375 Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708 |||||||| |||| ||||| || || ||||| || ||||| |||| || Sbjct 127374 GAGCTTGCTAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAG 127315 Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 |||||| ||||| ||||||| ||| || ||||| ||||||| Sbjct 127314 ACCCTGAACACCGACACCAATGGGACGGTGACGCATGTTGCT 127273 >seq33 Length=329773 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 150736 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCCACCCTCATCAACGTCCT 150795 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 150796 CACTGGTGAGCTCATCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 150855 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||| ||||| |||||||| |||| |||||| | Sbjct 150856 CTACATCAAGCAGCACGCTTTCGCCCATATCGATAACCACCTCGACAAGACTCCCTCTGA 150915 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | ||||||| Sbjct 150916 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGATCG 150966 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| |||||||| || ||| Sbjct 149921 GGTGAGGATCTCTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 149980 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | ||||||||| | || || ||||| ||||||||| || | Sbjct 149981 CAGACCCACCTTCGTCTGAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 150040 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || |||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 150041 GGCAAGTCCACCCTTATGCGCGCCATTAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 150099 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 || ||||| | ||| || | || ||||||||| | |||||| Sbjct 150100 GTCCGAGGTCAAGACCGTCTTCGTTGAGCACGACCTTGACTCC 150142 Score = 96.9 bits (106), Expect = 7e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| || ||||| || ||||||| ||||| |||||||| || || | Sbjct 151293 CCAACTTCGGTCTCGATGCCGAGCTTGTTTCTCACTCCCGCATGCGCGGTCTGTCCGGTG 151352 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| | | || ||||| ||||| | |||||| ||||||| Sbjct 151353 GTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGCTCT-TGGCAGCGTCCTCACTTGATCGTC 151411 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||||||||||||||||| ||||| || Sbjct 151412 CTTGACGAGCCTACCAACTATCTCGACCGTGA 151443 >seq148 Length=90698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 29462 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 29521 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 29522 CCCACGTCGGGCTCAATTC-CCGTC 29545 >seq172 Length=75056 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 51827 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 51886 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 51887 CCCACGTCGGGC 51898 >seq138 Length=103278 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 71681 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 71622 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 71621 CCCACGTCGGGC 71610 >seq133 Length=109708 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 16061 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 16120 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 16121 CCCACGTCGGGC 16132 >seq132 Length=110587 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 80350 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 80409 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 80410 CCCACGTCGGGC 80421 >seq126 Length=115376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 85423 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 85482 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 85483 CCCACGTCGGGC 85494 >seq112 Length=129869 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 105301 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 105242 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 105241 CCCACGTCGGGC 105230 >seq108 Length=135835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 101112 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 101053 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 101052 CCCACGTCGGGC 101041 >seq107 Length=136533 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 51002 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 50943 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 50942 CCCACGTCGGGC 50931 >seq76 Length=189259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 4298 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 4357 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 4358 CCCACGTCGGGC 4369 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 16577 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 16518 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 16517 CCCACGTCGGGC 16506 >seq55 Length=238400 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 43217 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 43158 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 43157 CCCACGTCGGGC 43146 >seq47 Length=276757 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 233838 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 233779 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 233778 CCCACGTCGGGC 233767 >seq44 Length=281184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 15944 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 16003 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 16004 CCCACGTCGGGC 16015 >seq35 Length=306815 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 289251 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 289192 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 289191 CCCACGTCGGGC 289180 >seq30 Length=334320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 266335 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 266394 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 266395 CCCACGTCGGGC 266406 >seq18 Length=383124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 22937 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 22996 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 22997 CCCACGTCGGGC 23008 >seq14 Length=412804 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 27059 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 27000 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 26999 CCCACGTCGGGC 26988 >seq12 Length=423709 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 113231 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 113290 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 113291 CCCACGTCGGGC 113302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832085441078