Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq81 158 2e-33 seq46 158 2e-33 seq18 149 1e-30 seq43 125 1e-23 seq33 111 3e-19 seq27 105 1e-17 seq86 93.3 8e-14 >seq81 Length=180685 Score = 158 bits (174), Expect = 2e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || |||||||| || |||||| Sbjct 25115 CCACCACGGAGGCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 25174 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 25175 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 25234 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| |||||| ||||||||||| ||| || || || Sbjct 25235 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATGGTGTC-GCTAGACTCCAC 25293 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 25294 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 25344 >seq46 Length=277877 Score = 158 bits (174), Expect = 2e-33 Identities = 564/870 (65%), Gaps = 29/870 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || || || |||||||||||||| |||||| Sbjct 255849 TTCATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCA 255908 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGCGCCAAACTGCTTGGGGTA 10051 |||| |||||| |||||||||||| |||||||| ||| | | | ||| || Sbjct 255909 CCGAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTCGAC-CTGTAGATCTTCTCGTT 255967 Query 10052 ACCGAGTGCTGTGAAAATG---CGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108 ||||| || || || | || || || ||||||||||||||||| |||| ||||| Sbjct 255968 GCCGAGGGC---GACAAGGAGACGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTC 256024 Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168 | ||||||||||| | | ||| |||| ||| || | ||| |||| || | Sbjct 256025 GGCGTTCATGCCAAGAAGGGCGCAAGGGAGGGCCTCAGTGAGGAACTCCTGCTCAATTCT 256084 Query 10169 GACCGCTTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCT 10224 ||| || || | | ||| || | || | | ||| | | ||||| ||| | Sbjct 256085 GACGGCATCGACAATGATTTCCTGGATCAGCTGCTTGCTGGGGC-GGTTGTT---GAGGT 256140 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 || | || || |||| | |||||| ||||| || ||| ||||| ||||| Sbjct 256141 GAGAGAAGAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGT 256200 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344 |||| || || || |||||||| || || || |||||||| |||| | ||| | Sbjct 256201 TGGAAAAGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAG 256260 Query 10345 ACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AG 10403 ||| ||| | | |||||| ||| | |||||||||| |||| || |||| | Sbjct 256261 CACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGG 256320 Query 10404 CGGTCGCG-CGAAAAGTATTTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATC 10460 | || | || || | ||| ||||| | ||||| || | | | |||||| Sbjct 256321 AGCTCTTGTCGGTAA-TCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATG 256379 Query 10461 GTCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGG 10520 || || ||||| | |||||| | | | | || || |||| || || || | | Sbjct 256380 GTGTCAATAGCGTTGAAGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATG 256439 Query 10521 AGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATA 10580 || |||||||| |||| ||| | | |||| | |||| || ||||||| Sbjct 256440 AGGAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAG 256499 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 || ||| |||| | |||||| | ||| | | |||||||| | || || Sbjct 256500 CGAGCCTCGGGGATCTGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATA 256559 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 |||||| | | || ||||| |||| ||||| ||||||| ||| || |||||| Sbjct 256560 CCATCGGAGGCAGCGAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTC 256619 Query 10701 A----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 | ||| || |||||| | |||| | ||| | | |||||| ||||||| Sbjct 256620 AACCTGTTGTT----CCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCA 256675 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||| | || |||||||||||||||| || Sbjct 256676 GAAGGAAGCCTCGGCCTTCTTGTACATTTG 256705 >seq18 Length=383124 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | || || || ||||| || || ||||| || ||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | |||||| |||||||| ||||| | || || ||||| ||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| |||||| ||||||| ||||| ||||| | ||||| || Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||||||||| || ||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || || ||||| ||||| ||| Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || |||||||| || || || || || | || ||||| || || Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || |||||| ||| ||| || || || || | || || ||| Sbjct 57789 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACT 57730 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || ||||| | |||||||||||| |||||||| Sbjct 57729 TCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || ||| ||| || || ||||| || |||||| Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || ||||| Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || |||||| ||| ||| ||||||||||| | || || || Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACC 57502 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || || ||||| ||||| |||||||| Sbjct 57501 TCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 >seq43 Length=285406 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || || || || Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || |||||||| || || || |||||||| |||||||| |||||| || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | |||||||| || |||||||||||||||||||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 >seq33 Length=329773 Score = 111 bits (122), Expect = 3e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| |||| |||||||| || |||||| |||||| Sbjct 150930 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCGAGGTGGTTATCGATATGGGCGAAAGCG 150871 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 150870 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 150811 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || |||||||| |||||||| || | |||||| ||||| ||||||||||| Sbjct 150810 ATGAG-CTCACCAGTGAGGACGTTGATGAGGGTGGACTTGCCGGCACCGTTGGGGCCAAT 150752 Query 225160 CACGCCAATCCGGGA 225174 ||| |||| ||||| Sbjct 150751 GACGGCAATACGGGA 150737 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225772 GTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAG 225831 ||||| |||||| || ||| | || ||| || || || | |||||| ||||| | Sbjct 150139 GTCAAGGTCGTGCTCAACGAAGACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCGAC 150080 Query 225832 CTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAG 225891 ||| | || ||| || || | ||||| |||||| | |||||||||||| || Sbjct 150079 CTGCTCGTTGTTAATGGCGCGCATAAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAG 150020 Query 225892 GCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACC 225951 ||||| | | || ||||| | ||| | || ||| || || |||||| |||| Sbjct 150019 ACCGTAGCGCTGGCCACGCTTCAGACGAAGGTGGGTCTGGTTGAGAAGAATCTTGGCACC 149960 Query 225952 ATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 |||||||| ||||| ||| | ||| || |||||||||||||| Sbjct 149959 GTAGGCAAGAGAGAAGGTGCAGTTGCAGAGATCCTCACCCTCCTC 149915 >seq27 Length=341693 Score = 105 bits (116), Expect = 1e-17 Identities = 230/336 (68%), Gaps = 14/336 (4%) Strand=Plus/Minus Query 275239 CTAAAAGTATACGTCCTGGACGACAGCGATTCCCCGGACG----TCAAGGA-GCTCTCCG 275293 || || || || ||||| |||||||||| || |||||| || | | |||| | | Sbjct 103145 CTCAAGGTCTATGTCCTTGACGACAGCG---CCTCGGACGCGGTTC--GCACGCTCGCTG 103091 Query 275294 GGTTCTTTGGGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGC 275352 || ||| |||||||| || | || ||||| |||| || | | |||||||| Sbjct 103090 AGT-CTTACGGTTTCAACTACATTGTTCGCGATGACCGTCCCCGCCTTCGTAAGGCCGGT 103032 Query 275353 AACCTCCGGTCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGAC 275412 |||||||| | || || || ||| | || || ||||||| |||||||||||| || Sbjct 103031 AACCTCCGTTGGGCTTTCGCCCGCACACAGGGTGACTTCTTTGCCATCTTTGACGCTGAT 102972 Query 275413 TTCTGCCCAAGGCCCGACTTCCTCGAGGAGACACTTGGCAGGATGAAGGCAGATCCCACG 275472 |||||||| | || || |||||| |||| ||| | | | ||| ||| || | Sbjct 102971 TTCTGCCCTCGTCCGGATTTCCTCAGGGAGTTGGTTGTCGAGCACATGGCCGATGACAAG 102912 Query 275473 ATTGCCATCTTCCAAACTCCCCAGTTCTT-CGAGCAGCGCAATGAGCAGAACTACGTGGA 275531 | |||||| | || | |||||| | ||| |||| || |||| |||| | || || Sbjct 102911 ACCGCCATCATTCAGAGTCCCCAATACTTCCGAGTTACG-GATGACCAGACTTGGGTTGA 102853 Query 275532 GAAGGGAGCCGGCGCCGTCCAGGAGCTCTTCTATCG 275567 | |||| || || || ||||||||| |||||||| Sbjct 102852 GCAGGGCGCTGGAGCTACCCAGGAGCTTTTCTATCG 102817 >seq86 Length=170212 Score = 93.3 bits (102), Expect = 8e-14 Identities = 174/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 31354 CGGGAGACCCCTCAAAGGTAGGATGGGGACCGTGCTCTTCCGCGAGTTCGCAAGAGGCCT 31413 |||| || || || |||| | | || || ||||| | ||||| | ||||||||| Sbjct 127474 CGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAG 127415 Query 31414 CCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAG 31473 | || || ||| || |||| || || | |||||| || | |||||||||| Sbjct 127414 TAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAG 127355 Query 31474 AGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAA 31533 | || || |||||||| || ||||| | || ||||||||| ||||| || |||| Sbjct 127354 AATCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAA 127295 Query 31534 TTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAA 31593 | || || | |||||||| || | | ||||| || | |||| ||| ||||| Sbjct 127294 TGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAA 127235 Query 31594 TGCTCTTGTCGAGGTT 31609 || |||||| |||||| Sbjct 127234 TGATCTTGTTGAGGTT 127219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618275739760