Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq86 448 9e-121 seq46 383 3e-101 >seq86 Length=170212 Score = 448 bits (496), Expect = 9e-121 Identities = 1133/1712 (66%), Gaps = 63/1712 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799 ||||||||| ||| || | | || |||| || | ||||||||||||||||||||||| Sbjct 128044 TGAACTGGATGGGCTGAG-CAGCAGCCTGCGTACGGAGGTAGTACATGCCGGTCTTGAGA 127986 Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859 || | |||| || || |||||| || | ||| ||| || ||| Sbjct 127985 CCCATCTTCCAGCCGGCGAAATGCATGCTGGTAATCTTGCCCATGGTG-------GGT-- 127935 Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919 |||| || | ||||||||||||| ||| || | ||||| | || || || Sbjct 127934 ---TCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCACGATCGGCA 127878 Query 243920 GCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| ||| | ||| | |||||| ||||| | | ||||| |||| | ||||| Sbjct 127877 GCCATCTTGACAATGGTACG-CTGAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGAT 127819 Query 243979 GTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 || | ||| | | || ||||||||| | || || | | |||| || | Sbjct 127818 GTCATTGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759 Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094 |||| ||| ||| ||||||| | | || || || ||||| | || | Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGG----TTGA 127703 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | ||||| || || ||||||| ||| | || ||||||| Sbjct 127702 CGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGA 127643 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| ||||||| || ||||| | ||| ||||| ||||| || | | ||||| Sbjct 127642 AGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCA 127583 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTCTGAGCTCGTTCCAGTCCCACATG 244273 ||||||| | || |||| | ||| |||| | | | |||| | |||||||||| Sbjct 127582 GACTGTTGCGAACACCGTACTTCTTGATGTCCGCCT-TGAGAGCAGTCCAGTCCCA---- 127528 Query 244274 CCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG 244333 ||||| | ||| | ||||||||| | || || | |||| | |||| Sbjct 127527 -----GAGGTTGGTAGGGGTGACGTTCCACATGTCGTATTGGAGGATTCCCTGGGAGACG 127473 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 || ||| |||||||| | ||| || || | || ||| |||| || | Sbjct 127472 GGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTA 127413 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 || ||||||| ||||||||||||||| ||| |||| | | || ||| | | | Sbjct 127412 AGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAGAA 127353 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 |||||| |||| | || ||| | || || || ||||| || |||| || ||| Sbjct 127352 TCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAATG 127293 Query 244514 GGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATC 244573 || | ||| ||| ||||| | ||| || |||||||| |||| ||| || Sbjct 127292 GGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAATG 127233 Query 244574 ACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 | |||||||||||||||| || | | ||| ||| |||| || |||||||| Sbjct 127232 ATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAA 127173 Query 244634 TCGTAGGGATCCTCGGCGATGGT-GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 ||| || |||| | || ||| ||| || ||||||| ||| || Sbjct 127172 G---AGGCATTCTCG----TAGTCGAT------AAAGGCGGAAAGGGCGAGAGAGGCAAG 127126 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| ||||| ||||| |||| | ||||| || |||||| ||||| ||||| Sbjct 127125 GTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTGGA 127066 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||| ||||||| || || || |||| ||||||||| ||||||||||| Sbjct 127065 GCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAG 127006 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||||||||| || ||||| |||||| |||||| | | ||| || | | || Sbjct 127005 CATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGC 126946 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 |||||| ||| ||||| ||||||| || ||||| |||||| || |||||||| Sbjct 126945 CTTGACGGTCTTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTC 126886 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCC 244992 | || | || ||| | ||||| |||||| |||||||||||| |||||| ||| Sbjct 126885 GTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCC 126826 Query 244993 GCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCT 245052 | | || || | || |||||| || ||||||||||||||||| ||||||| || | Sbjct 126825 GTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCG 126766 Query 245053 GGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGAC 245112 | | | ||| ||| || |||||| | || || | || || ||||| ||| | Sbjct 126765 AGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCGGC 126706 Query 245113 GTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||||| ||||| | ||||| |||| || || || ||||||||||| ||||||| Sbjct 126705 GTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACCCTGGT---- 126650 Query 245173 CATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 || | | || ||| |||||||| || || | || || || ||||| || || Sbjct 126649 CAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGATGTGC 126590 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGGACATGCCTA 245285 ||||||| || |||||||| ||| || | | || ||| | || || | || | Sbjct 126589 CGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTG---AGACCGA 126533 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 ||||| || ||| ||||| | ||||||| |||||| ||| || |||||||| | Sbjct 126532 TACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCTCGA 126473 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 | ||||| |||||||| || ||| ||||| || || |||||||||| ||| | | | Sbjct 126472 TACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGG 126413 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||||| || ||||| |||||||| ||| Sbjct 126412 CGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAG 126381 >seq46 Length=277877 Score = 383 bits (424), Expect = 3e-101 Identities = 613/859 (71%), Gaps = 26/859 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| || Sbjct 256711 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 256652 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||||||| || |||| | || | ||| || |||| ||||| ||| || Sbjct 256651 TCCAAGGACCTTCACGACTGGAACA-ACAGGTTGAACGACGACGAGAAGTTCTTCATCTC 256593 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || || |||||||| ||||| || || || |||||||||||||| | | | Sbjct 256592 CCACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGAGCG 256533 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || || ||| | ||||| |||||||||||||| |||||||| || Sbjct 256532 CTTCAGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 256473 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| |||||| ||| ||| Sbjct 256472 GGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACTTACATCAAGGAGCCCTC 256413 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | | | || ||||| || || || || || || |||||| || ||||| || Sbjct 256412 CCAGAGGACCTACCTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAAGGCTGA 256353 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 |||||| || |||||| | | | || | | || || | | || | || || |||| Sbjct 256352 CTGGGCTCTTCGCTGGATT-ACCGACAAGAGCTCCACCTTTGCCCAGCGTCTCGTCGCCT 256294 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | ||||||||||| ||||||||| || || |||||||||||||||||||||||| Sbjct 256293 TTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAAGA 256234 Query 42775 AGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || ||||| || || ||||| || ||||| |||||| | | || ||||| Sbjct 256233 AGCGCGGTCTC-ATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGATGAGGGT 256175 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCTCG- 42890 || || | |||||||||||||| || ||||| ||||||| |||| |||| | Sbjct 256174 CTCCACACCGACTTTGCCTGCCTTCTCTTCTC---TCACCTCA---ACAACCGCCCCAGC 256121 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||| ||| | ||| || ||||| || ||||| || ||| ||||||||||||| Sbjct 256120 AAGCAGCTGATCCAGGAAATCATTGTCGATGCCGTCAGAATTGAGCAGGAGTTCCTCACT 256061 Query 42951 CAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| || |||| | ||||||||| |||||||||| |||||||| | Sbjct 256060 GAGGCCCT-CCCTTGCGCCCTTCTTGGCATGAACGCCGACCTCATGAAGCAGTACATCGA 256002 Query 43010 GTACGTCGCCGACCATCTCC-TGT-GCCAGATGGGTCTC-AGCCGCCTCTACAACACGCC 43066 || ||||||||| | ||||| ||| ||| | || | || | |||||| || | Sbjct 256001 GTTCGTCGCCGATCGTCTCCTTGTCGCC--CTCGGCAACGAGAAG-ATCTACAGGTCGAC 255945 Query 43067 GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 |||||||||||| ||||||||||| || | | |||||||||||||| |||||||| Sbjct 255944 TAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 255885 Query 43127 GCGCGTCGCCGACTACCAG 43145 ||| || | |||||||||| Sbjct 255884 GCGTGTTGGCGACTACCAG 255866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334974082080