Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq18 109 4e-19 >seq18 Length=383124 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||| ||||| |||||||||||||||||||||||||| | | || Sbjct 57900 AGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGG 57841 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| ||||| || ||||| ||||| |||||||| || ||| | | ||| Sbjct 57840 CCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCC 57781 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 |||||| || |||||||| | | | ||| | |||| | ||| ||| ||| | ||| Sbjct 57780 TTGTCCTGGATCTTTTGCTTCACGTTA-TCAATCGTATCCGAAGACTCGACTTCCAGCGT 57722 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || | || || || || || ||||| Sbjct 57721 AATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 86.0 bits (94), Expect = 5e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || || || || ||||||||| |||||||| || | Sbjct 57226 ACCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 57167 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || ||||| |||||||||||||| |||| ||||||||| || | Sbjct 57166 -AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGG 57108 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || ||| |||||| ||| |||||||| Sbjct 57107 GAATGCCCTCCTTGTCCTGAATCTTTTGCTT 57077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| || |||||||||||||||||| || ||| || Sbjct 57444 AGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGG 57385 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| || | || ||| Sbjct 57384 CCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCC 57325 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 ||||| || |||||||| | | | | | || | ||||| || | || Sbjct 57324 TTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTG 57265 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||||||||| Sbjct 57264 ATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060667567116