Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq81 140 8e-28 seq18 129 1e-24 seq46 123 6e-23 seq43 89.7 1e-12 >seq81 Length=180685 Score = 140 bits (154), Expect = 8e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| || | ||||| || || ||||| || ||||||| | Sbjct 25115 CCACCACGGAGGCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 25174 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || | ||| Sbjct 25175 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 25234 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || || || || || | ||||| || || || Sbjct 25235 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACC 25294 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || || || ||||| ||||| |||||||| || Sbjct 25295 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 25344 >seq18 Length=383124 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| |||||||||| || || || || || || |||||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| |||||||| | || || || ||||| || |||||||| ||| || Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || || ||||| ||| |||| ||||| || |||| ||| |||||| || Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTG-ACGTTGTCGATAGTGTCGGACGATTCCAC 57275 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 57274 CTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || | |||| ||||| || || || || || || || Sbjct 57912 TGGCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCA 57853 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || || || || || || || || || |||||||||||||| || | Sbjct 57852 GAGAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGC 57793 Query 288364 GGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || || |||||||| ||| |||| |||||| || || | ||| || || Sbjct 57792 GGGATACCCTCCTTGTCCTGGATCTTTTGCTT-CACGTTATCAATCGTATCCGAAGACTC 57734 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || |||| ||||||||||| |||||||| Sbjct 57733 GACTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 >seq46 Length=277877 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 269155 GGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG 269214 || ||||| ||||| |||||||| || || ||||| ||||| || |||||| || | Sbjct 256036 GGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTCCTTGTC 255977 Query 269215 GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATT 269274 || ||||| | ||||| | |||| |||| || ||||||| ||| ||||| ||| Sbjct 255976 GCCCTCGGCAACGAGAAGATCTACAGGTCGACTAACCCCTTCGACTTCATGGAGAACATT 255917 Query 269275 TCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGT 269334 || |||| || ||||| ||||||||||| |||||||| ||||||| || ||||| Sbjct 255916 TCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAAGGCTGGT 255857 Query 269335 GTAATGAA 269342 || ||||| Sbjct 255856 GTCATGAA 255849 >seq43 Length=285406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| || || || | || || || || || ||| Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || ||||| || || || ||||| || ||| || || || || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || ||||||||||| ||||| || || || ||||||||||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648989072724