Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq46 107 4e-18 seq175 93.3 9e-14 seq33 89.7 1e-12 >seq46 Length=277877 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| ||||||||||| | || |||||| ||||||||||| ||||| ||||| || | Sbjct 256042 CTTCTTGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTC 255983 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| || || | ||||| | |||| || | |||||||| | ||| |||||| Sbjct 255982 CTTGTCGCCCTCGGCAACGAGAAGATCTACAGGTCGACTAACCCCTTCGACTTCATGGAG 255923 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 |||||| || || || || ||||||||||| |||||||| | || || || Sbjct 255922 AACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAAG 255863 Query 243742 CCTGGTGTGATGAA 243755 ||||||| ||||| Sbjct 255862 GCTGGTGTCATGAA 255849 >seq175 Length=71793 Score = 93.3 bits (102), Expect = 9e-14 Identities = 180/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 333726 TTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGG 333785 || ||||| ||| || || |||||||| | ||||| ||| || ||||| ||| Sbjct 10845 TTGACGAAGGCGGCGAGGTTGCCCTTGTAGTGGCCAAGCTTCTTGTTGGGCTCGTAGTGG 10786 Query 333786 ATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAA 333845 || |||| ||| ||||||||| ||||||||||| |||||||||| | | | Sbjct 10785 TAGATGTCGGTGGTGACATTGTCGAGGAAACCGGAGTCGTGAGACACAATCAGGGAGGTG 10726 Query 333846 ACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGG 333905 | ||| | || | ||||| || |||||| | | ||| | ||| ||||||| Sbjct 10725 ATGTCGGTGTGGGACTTGAGGTACTCCTCGAGCCACTTGATGTTGGCAACATCAAGATGG 10666 Query 333906 TTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCG 333965 || || || ||||| || | || | | || ||| | ||||| ||||| || | ||| Sbjct 10665 TTAGTAGGTTCGTCGAGCAACAGGACATCGGCCTTCTGAAGCATGGCACGCGCCAAGGCG 10606 Query 333966 AGTTTCATTTTCCACCCTCCTGAAAG 333991 || ||||| ||||| || || || || Sbjct 10605 AGCTTCATCTTCCAACCACCGGAGAG 10580 >seq33 Length=329773 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| ||| |||||||| || || || || || | || Sbjct 150094 GGGGAAACCCTCGACCTGCTCGTTGTTAATGGCGCGCATAAGGGTGGACTTGCCGGAACC 150035 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || ||||||||||| | |||||||||||| | | || | ||| || Sbjct 150034 GTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTCAGACGAAGGTGGGTCTGGTTGAG 149975 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || |||| || || ||||| || || | || ||||||||||| Sbjct 149974 AAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAGAGATCCTCACC 149921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874941227300